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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
153343-153476
(-)
glycine
152139-153258 (-)
GEM_0137
Aminomethyltransferase (0) (Glycine cleavage system T protein)
GEM_0137
Single gene
DOOR ID:
3891166
GEM_0137
View Structure
2
153508-153612
(-)
glycine
152139-153258 (-)
GEM_0137
Aminomethyltransferase (0) (Glycine cleavage system T protein)
GEM_0137
Single gene
DOOR ID:
3891166
GEM_0137
View Structure
3
199192-199308
(+)
SAH
199342-200761 (+)
GEM_0181
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
GEM_0181
Single gene
DOOR ID:
3891186
GEM_0181
View Structure
4
836780-836928
(+)
FMN
837046-837757 (+)
GEM_0755
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
GEM_0755
Single gene
DOOR ID:
3891416
GEM_0755
View Structure
5
1065757-1066010
(+)
cobalamin
1066075-1066759 (+)
GEM_0973
GEM_0973
Single gene
DOOR ID:
3891514
GEM_0973
View Structure
6
1234946-1234990
(+)
mini-ykkC
1235012-1235333 (+)
GEM_1129
GEM_1129
Single gene
DOOR ID:
3891587
GEM_1129
View Structure
7
1882790-1882980
(+)
cobalamin
1883068-1884448 (+)
GEM_1742
Precorrin-3B synthase
GEM_1742
Operon
DOOR ID:
1142227
GEM_1742,
GEM_1743,
GEM_1744,
GEM_1745
View Structure
8
1902874-1903137
(-)
cobalamin
1901627-1902686 (-)
GEM_1759
Nickel/cobalt efflux system
GEM_1759
Single gene
DOOR ID:
3891825
GEM_1759
View Structure
9
1903225-1903460
(+)
cobalamin
1903569-1904379 (+)
GEM_1760
Uroporphyrin-III C-methyltransferase (6)
GEM_1760
Operon
DOOR ID:
1142232
GEM_1760,
GEM_1761,
GEM_1762,
GEM_1763
View Structure
10
2478545-2478661
(+)
TPP
2478784-2480716 (+)
GEM_2268
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
GEM_2268
Single gene
DOOR ID:
3892029
GEM_2268
View Structure
11
2741844-2741981
(+)
yybP-ykoY
2742059-2742632 (+)
GEM_2503
Transmembrane protein
GEM_2503
Single gene
DOOR ID:
3892123
GEM_2503
View Structure
12
2971388-2971488
(-)
ZMP-ZTP
2970002-2971298 (-)
GEM_2727
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
GEM_2727
Operon
DOOR ID:
1142419
GEM_2726,
GEM_2727
View Structure
13
3388316-3388439
(-)
TPP
3386944-3388081 (-)
GEM_3112
FAD dependent oxidoreductase (9)
GEM_3112
Operon
DOOR ID:
1142498
GEM_3109,
GEM_3110,
GEM_3111,
GEM_3112
View Structure
Genome:
Burkholderia cepacia GG4 chromosome I
(
NC_018513.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"153343-153476";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"152139-153258";i:10;s:1:"-";i:11;s:8:"GEM_0137";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"GEM_0137";i:14;s:11:"Single gene";i:15;s:7:"3891166";i:16;s:8:"GEM_0137";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"153508-153612";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"152139-153258";i:10;s:1:"-";i:11;s:8:"GEM_0137";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"GEM_0137";i:14;s:11:"Single gene";i:15;s:7:"3891166";i:16;s:8:"GEM_0137";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"199192-199308";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"199342-200761";i:10;s:1:"+";i:11;s:8:"GEM_0181";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"GEM_0181";i:14;s:11:"Single gene";i:15;s:7:"3891186";i:16;s:8:"GEM_0181";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"836780-836928";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"837046-837757";i:10;s:1:"+";i:11;s:8:"GEM_0755";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"GEM_0755";i:14;s:11:"Single gene";i:15;s:7:"3891416";i:16;s:8:"GEM_0755";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1065757-1066010";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1066075-1066759";i:10;s:1:"+";i:11;s:8:"GEM_0973";i:12;s:0:"";i:13;s:8:"GEM_0973";i:14;s:11:"Single gene";i:15;s:7:"3891514";i:16;s:8:"GEM_0973";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1234946-1234990";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1235012-1235333";i:10;s:1:"+";i:11;s:8:"GEM_1129";i:12;s:0:"";i:13;s:8:"GEM_1129";i:14;s:11:"Single gene";i:15;s:7:"3891587";i:16;s:8:"GEM_1129";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1882790-1882980";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1883068-1884448";i:10;s:1:"+";i:11;s:8:"GEM_1742";i:12;s:22:"Precorrin-3B synthase ";i:13;s:8:"GEM_1742";i:14;s:6:"Operon";i:15;s:7:"1142227";i:16;s:35:"GEM_1742;GEM_1743;GEM_1744;GEM_1745";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1902874-1903137";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1901627-1902686";i:10;s:1:"-";i:11;s:8:"GEM_1759";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:8:"GEM_1759";i:14;s:11:"Single gene";i:15;s:7:"3891825";i:16;s:8:"GEM_1759";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1903225-1903460";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1903569-1904379";i:10;s:1:"+";i:11;s:8:"GEM_1760";i:12;s:40:"Uroporphyrin-III C-methyltransferase (6)";i:13;s:8:"GEM_1760";i:14;s:6:"Operon";i:15;s:7:"1142232";i:16;s:35:"GEM_1760;GEM_1761;GEM_1762;GEM_1763";i:17;s:42:"siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2478545-2478661";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2478784-2480716";i:10;s:1:"+";i:11;s:8:"GEM_2268";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"GEM_2268";i:14;s:11:"Single gene";i:15;s:7:"3892029";i:16;s:8:"GEM_2268";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2741844-2741981";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2742059-2742632";i:10;s:1:"+";i:11;s:8:"GEM_2503";i:12;s:21:"Transmembrane protein";i:13;s:8:"GEM_2503";i:14;s:11:"Single gene";i:15;s:7:"3892123";i:16;s:8:"GEM_2503";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2971388-2971488";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2970002-2971298";i:10;s:1:"-";i:11;s:8:"GEM_2727";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"GEM_2727";i:14;s:6:"Operon";i:15;s:7:"1142419";i:16;s:17:"GEM_2726;GEM_2727";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018513.1";i:2;s:37:"Burkholderia cepacia GG4 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3388316-3388439";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3386944-3388081";i:10;s:1:"-";i:11;s:8:"GEM_3112";i:12;s:32:"FAD dependent oxidoreductase (9)";i:13;s:8:"GEM_3112";i:14;s:6:"Operon";i:15;s:7:"1142498";i:16;s:35:"GEM_3109;GEM_3110;GEM_3111;GEM_3112";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}}
