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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1952929-1953041
(+)
glycine
1953145-1955935 (+)
gcvP
AMES_1800
Operon
DOOR ID:
1139270
AMES_1800
(gcvP)
,
AMES_1801
(gcvT)
,
AMES_1802
(gcvH)
,
AMES_1803
(glyA)
,
AMES_1804
(lipA)
,
AMES_1805
(sdaA)
View Structure
2
3182842-3182956
(+)
SAM-IV
3182995-3184339 (+)
AMES_2936
AMES_2936
Single gene
DOOR ID:
3885927
AMES_2936
View Structure
3
5521913-5522011
(-)
glycine
5518715-5521601 (-)
gcvP
AMES_4924
Operon
DOOR ID:
1139961
AMES_4922,
AMES_4923
(galE)
,
AMES_4924
(gcvP)
View Structure
4
5749531-5749609
(-)
SAH
5745886-5749516 (-)
metH
AMES_5113
Single gene
DOOR ID:
3886472
AMES_5113
(metH)
View Structure
5
5848963-5849041
(+)
SAH
5849125-5850586 (+)
ahcY
AMES_5200
Operon
DOOR ID:
1140027
AMES_5200
(ahcY)
,
AMES_5201
View Structure
6
7373270-7373408
(-)
ykkC-yxkD
7372368-7373265 (-)
AMES_6585
AMES_6585
Operon
DOOR ID:
1140341
AMES_6583,
AMES_6585
View Structure
7
7375185-7375318
(+)
SAM
7375331-7376597 (+)
thrC
AMES_6588
Operon
DOOR ID:
1140342
AMES_6588
(thrC)
,
AMES_6589
View Structure
8
7820032-7820145
(+)
cobalamin
7820194-7823758 (+)
cobN
AMES_6961
Operon
DOOR ID:
1140424
AMES_6961
(cobN)
,
AMES_6962
View Structure
9
8858954-8859061
(-)
TPP
8857883-8858918 (-)
tbpA
AMES_7922
Operon
DOOR ID:
1140631
AMES_7920,
AMES_7921,
AMES_7922
(tbpA)
View Structure
10
9082493-9082583
(-)
SAM
9081271-9082285 (-)
AMES_8120
AMES_8120
Operon
DOOR ID:
1140679
AMES_8116,
AMES_8117,
AMES_8118,
AMES_8119
(ispE)
,
AMES_8120
View Structure
11
9419701-9419822
(+)
TPP
9419842-9421453 (+)
thiC
AMES_8440
Operon
DOOR ID:
1140756
AMES_8440
(thiC)
,
AMES_8441
View Structure
12
9426896-9427001
(-)
TPP
9425628-9425829 (-)
thiS
AMES_8446
Operon
DOOR ID:
1140757
AMES_8444,
AMES_8445
(thiG)
,
AMES_8446
(thiS)
,
AMES_8447
(thiO)
View Structure
13
9523683-9523772
(+)
SAH
9525557-9526085 (+)
AMES_8540
AMES_8540
Operon
DOOR ID:
1140777
AMES_8537,
AMES_8538
(otsA)
,
AMES_8539
(otsB)
,
AMES_8540,
AMES_8541,
AMES_8542,
AMES_8543
(rpoE)
,
AMES_8544
View Structure
Genome:
Amycolatopsis mediterranei S699
(
NC_018266.1
);
Phylum:
Actinobacteria
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";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"7820032-7820145";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"7820194-7823758";i:10;s:1:"+";i:11;s:4:"cobN";i:12;s:0:"";i:13;s:9:"AMES_6961";i:14;s:6:"Operon";i:15;s:7:"1140424";i:16;s:25:"AMES_6961(cobN);AMES_6962";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018266.1";i:2;s:32:"Amycolatopsis mediterranei S699 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"8858954-8859061";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"8857883-8858918";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:9:"AMES_7922";i:14;s:6:"Operon";i:15;s:7:"1140631";i:16;s:35:"AMES_7920;AMES_7921;AMES_7922(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018266.1";i:2;s:32:"Amycolatopsis mediterranei S699 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";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"9426896-9427001";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"9425628-9425829";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:0:"";i:13;s:9:"AMES_8446";i:14;s:6:"Operon";i:15;s:7:"1140757";i:16;s:57:"AMES_8444;AMES_8445(thiG);AMES_8446(thiS);AMES_8447(thiO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018266.1";i:2;s:32:"Amycolatopsis mediterranei S699 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"9523683-9523772";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"9525557-9526085";i:10;s:1:"+";i:11;s:9:"AMES_8540";i:12;s:0:"";i:13;s:9:"AMES_8540";i:14;s:6:"Operon";i:15;s:7:"1140777";i:16;s:97:"AMES_8537;AMES_8538(otsA);AMES_8539(otsB);AMES_8540;AMES_8541;AMES_8542;AMES_8543(rpoE);AMES_8544";i:17;s:0:"";i:18;s:15:"View Structure ";}}
