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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
194647-194821
(-)
lysine
192868-194452 (-)
EFD32_0189
EFD32_0189
Operon
DOOR ID:
1136712
EFD32_0188,
EFD32_0189
View Structure
2
618411-618506
(+)
SMK_box
619857-621324 (+)
EFD32_0597
EFD32_0597
Operon
DOOR ID:
1136800
EFD32_0597,
EFD32_0598
View Structure
3
782999-783166
(+)
THF
783205-783745 (+)
EFD32_0751
EFD32_0751
Single gene
DOOR ID:
3881522
EFD32_0751
View Structure
4
904221-904388
(-)
ykoK
903790-903874 (+)
EFD32_t042
EFD32_t042
Single gene
DOOR ID:
3882257
EFD32_t042
View Structure
5
907136-907303
(-)
ykoK
905318-907076 (-)
EFD32_0866
EFD32_0866
Operon
DOOR ID:
1136861
EFD32_0865,
EFD32_0866
View Structure
6
1147498-1147668
(+)
ykoK
1147693-1147813 (+)
EFD32_1106
EFD32_1106
Operon
DOOR ID:
1136913
EFD32_1106,
EFD32_1107
View Structure
7
1213615-1213782
(+)
ykoK
1214005-1216618 (+)
EFD32_1164
EFD32_1164
Single gene
DOOR ID:
3881653
EFD32_1164
View Structure
8
1344117-1344236
(+)
FMN
1344367-1344973 (+)
EFD32_1285
EFD32_1285
Single gene
DOOR ID:
3881703
EFD32_1285
View Structure
9
1439500-1439631
(-)
cobalamin
1438044-1439175 (-)
EFD32_1372
EFD32_1372
Single gene
DOOR ID:
3881737
EFD32_1372
View Structure
10
1443735-1443906
(-)
cobalamin
1442588-1443548 (-)
EFD32_1377
EFD32_1377
Operon
DOOR ID:
1136964
EFD32_1375,
EFD32_1376,
EFD32_1377
View Structure
11
1800272-1800419
(-)
glmS
1798385-1800194 (-)
EFD32_1742
EFD32_1742
Single gene
DOOR ID:
3881855
EFD32_1742
View Structure
12
2051668-2051765
(-)
purine
2050931-2051513 (-)
EFD32_1987
EFD32_1987
Operon
DOOR ID:
1137094
EFD32_1986,
EFD32_1987
View Structure
13
2153750-2153819
(-)
fluoride
2152407-2153673 (-)
EFD32_2080
EFD32_2080
Single gene
DOOR ID:
3881955
EFD32_2080
View Structure
14
2233587-2233631
(+)
PreQ1
2233708-2234689 (+)
EFD32_2156
EFD32_2156
Operon
DOOR ID:
1137133
EFD32_2156,
EFD32_2157
View Structure
15
2301656-2301701
(-)
PreQ1
2301136-2301643 (-)
EFD32_2219
EFD32_2219
Single gene
DOOR ID:
3881989
EFD32_2219
View Structure
16
2448596-2448686
(-)
TPP
2447927-2448491 (-)
EFD32_2384
EFD32_2384
Operon
DOOR ID:
1137193
EFD32_2381,
EFD32_2382,
EFD32_2383,
EFD32_2384
View Structure
17
2455902-2455990
(-)
TPP
2455272-2455803 (-)
EFD32_2392
EFD32_2392
Operon
DOOR ID:
1137194
EFD32_2389,
EFD32_2390
(thiE)
,
EFD32_2391,
EFD32_2392
View Structure
18
2872641-2872807
(+)
ykoK
2872898-2874515 (+)
EFD32_2798
EFD32_2798
Single gene
DOOR ID:
3882182
EFD32_2798
View Structure
Genome:
Enterococcus faecalis D32
(
NC_018221.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2872641-2872807";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2872898-2874515";i:10;s:1:"+";i:11;s:10:"EFD32_2798";i:12;s:0:"";i:13;s:10:"EFD32_2798";i:14;s:11:"Single gene";i:15;s:7:"3882182";i:16;s:10:"EFD32_2798";i:17;s:0:"";i:18;s:15:"View Structure ";}}