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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
126705-126887
(+)
cobalamin
126952-128821 (+)
A225_0120
A225_0120
Operon
DOOR ID:
1128683
A225_0120,
A225_0121
View Structure
2
264579-264692
(-)
TPP
262597-264493 (-)
A225_0252
A225_0252
Operon
DOOR ID:
1128706
A225_0247,
A225_0248,
A225_0249,
A225_0250,
A225_0251,
A225_0252
View Structure
3
312290-312523
(-)
lysine
310759-312109 (-)
A225_0297
A225_0297
Single gene
DOOR ID:
3867243
A225_0297
View Structure
4
437790-437834
(+)
mini-ykkC
437847-438165 (+)
A225_0418
A225_0418
Single gene
DOOR ID:
3867300
A225_0418
View Structure
5
549818-549932
(+)
Mg sensor
550030-552739 (+)
A225_0529
A225_0529
Single gene
DOOR ID:
3867342
A225_0529
View Structure
6
918313-918475
(-)
TPP
917297-918281 (-)
A225_0867
A225_0867
Operon
DOOR ID:
1128829
A225_0865,
A225_0866,
A225_0867
View Structure
7
1917657-1917795
(+)
MOCO
1918793-1919306 (+)
A225_1822
A225_1822
Operon
DOOR ID:
1129031
A225_1821,
A225_1822,
A225_1823,
A225_1824,
A225_1825,
A225_1826
View Structure
8
2653508-2653569
(-)
fluoride
2652111-2653428 (-)
A225_2510
A225_2510
Single gene
DOOR ID:
3867890
A225_2510
View Structure
9
3081293-3081371
(+)
ZMP-ZTP
3081391-3082075 (+)
A225_2916
A225_2916
Operon
DOOR ID:
1129259
A225_2914,
A225_2915,
A225_2916
View Structure
10
3083623-3083721
(+)
ykkC-yxkD
3083778-3084837 (+)
A225_2919
A225_2919
Operon
DOOR ID:
1129260
A225_2919,
A225_2920,
A225_2921,
A225_2922,
A225_2923,
A225_2924,
A225_2925
View Structure
11
3087930-3087978
(+)
mini-ykkC
3087997-3091603 (+)
A225_2924
A225_2924
Operon
DOOR ID:
1129260
A225_2919,
A225_2920,
A225_2921,
A225_2922,
A225_2923,
A225_2924,
A225_2925
View Structure
12
3104507-3104608
(-)
TPP
3103741-3104437 (-)
A225_2936
A225_2936
Operon
DOOR ID:
1129262
A225_2932,
A225_2933,
A225_2934,
A225_2935,
A225_2936
View Structure
13
3827212-3827366
(+)
yybP-ykoY
3827437-3828001 (+)
A225_3626
A225_3626
Single gene
DOOR ID:
3868217
A225_3626
View Structure
14
4203259-4203356
(-)
TPP
4202450-4203224 (-)
A225_3993
A225_3993
Operon
DOOR ID:
1129484
A225_3991,
A225_3992,
A225_3993
View Structure
15
4213816-4213912
(-)
TPP
4212386-4213748 (-)
A225_4000
A225_4000
Single gene
DOOR ID:
3868308
A225_4000
View Structure
16
4985480-4985771
(-)
cobalamin
4984012-4985392 (-)
A225_4750
A225_4750
Operon
DOOR ID:
1129640
A225_4732,
A225_4733,
A225_4734,
A225_4735,
A225_4736,
A225_4737,
A225_4738,
A225_4739,
A225_4740,
A225_4741,
A225_4742,
A225_4743,
A225_4744,
A225_4745,
A225_4746,
A225_4747,
A225_4748,
A225_4749,
A225_4750
View Structure
17
5299548-5299699
(-)
FMN
5298787-5299441 (-)
A225_5055
A225_5055
Single gene
DOOR ID:
3868519
A225_5055
View Structure
18
5717583-5717766
(+)
ykoK
5717822-5718836 (+)
A225_5495
A225_5495
Single gene
DOOR ID:
3868600
A225_5495
View Structure
Genome:
Klebsiella oxytoca E718
(
NC_018106.1
);
Phylum:
Gammaproteobacteria
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";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3104507-3104608";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3103741-3104437";i:10;s:1:"-";i:11;s:9:"A225_2936";i:12;s:0:"";i:13;s:9:"A225_2936";i:14;s:6:"Operon";i:15;s:7:"1129262";i:16;s:49:"A225_2932;A225_2933;A225_2934;A225_2935;A225_2936";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3827212-3827366";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3827437-3828001";i:10;s:1:"+";i:11;s:9:"A225_3626";i:12;s:0:"";i:13;s:9:"A225_3626";i:14;s:11:"Single gene";i:15;s:7:"3868217";i:16;s:9:"A225_3626";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4203259-4203356";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4202450-4203224";i:10;s:1:"-";i:11;s:9:"A225_3993";i:12;s:0:"";i:13;s:9:"A225_3993";i:14;s:6:"Operon";i:15;s:7:"1129484";i:16;s:29:"A225_3991;A225_3992;A225_3993";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4213816-4213912";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4212386-4213748";i:10;s:1:"-";i:11;s:9:"A225_4000";i:12;s:0:"";i:13;s:9:"A225_4000";i:14;s:11:"Single gene";i:15;s:7:"3868308";i:16;s:9:"A225_4000";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4985480-4985771";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4984012-4985392";i:10;s:1:"-";i:11;s:9:"A225_4750";i:12;s:0:"";i:13;s:9:"A225_4750";i:14;s:6:"Operon";i:15;s:7:"1129640";i:16;s:189:"A225_4732;A225_4733;A225_4734;A225_4735;A225_4736;A225_4737;A225_4738;A225_4739;A225_4740;A225_4741;A225_4742;A225_4743;A225_4744;A225_4745;A225_4746;A225_4747;A225_4748;A225_4749;A225_4750";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5299548-5299699";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5298787-5299441";i:10;s:1:"-";i:11;s:9:"A225_5055";i:12;s:0:"";i:13;s:9:"A225_5055";i:14;s:11:"Single gene";i:15;s:7:"3868519";i:16;s:9:"A225_5055";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_018106.1";i:2;s:24:"Klebsiella oxytoca E718 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5717583-5717766";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5717822-5718836";i:10;s:1:"+";i:11;s:9:"A225_5495";i:12;s:0:"";i:13;s:9:"A225_5495";i:14;s:11:"Single gene";i:15;s:7:"3868600";i:16;s:9:"A225_5495";i:17;s:0:"";i:18;s:15:"View Structure ";}}