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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
258732-258906
(-)
ykoK
258447-258558 (-)
EHR_01440
EHR_01440
Operon
DOOR ID:
1126795
EHR_01435,
EHR_01440,
EHR_01445
View Structure
2
520659-520705
(-)
PreQ1
520141-520645 (-)
EHR_02875
ECF transporter substrate-specific protein QueT (Integral membrane protein)
EHR_02875
Single gene
DOOR ID:
3863829
EHR_02875
View Structure
3
767435-767609
(+)
lysine
767858-769454 (+)
EHR_04040
Amino acid ABC transporter amino acid-binding/permease protein (Amino acid ABC transporter permease)
EHR_04040
Operon
DOOR ID:
1126900
EHR_04040,
EHR_04045
View Structure
4
1078641-1078742
(+)
TPP
1078826-1079387 (+)
EHR_05630
Thiamin permease
EHR_05630
Single gene
DOOR ID:
3863998
EHR_05630
View Structure
5
1128863-1128941
(+)
SMK_box
1130300-1131776 (+)
EHR_05830
Drug resistance transporter EmrB/QacA family protein (Major facilitator superfamily transporter)
EHR_05830
Single gene
DOOR ID:
3864009
EHR_05830
View Structure
6
1448859-1448992
(+)
FMN
1449101-1450175 (+)
EHR_07310
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
EHR_07310
Operon
DOOR ID:
1127042
EHR_07310,
EHR_07315,
EHR_07320,
EHR_07325
(ribH)
View Structure
7
1461233-1461331
(+)
THF
1461368-1461905 (+)
EHR_07380
Membrane protein
EHR_07380
Single gene
DOOR ID:
3864116
EHR_07380
View Structure
8
1670299-1670343
(-)
PreQ1
1669300-1670275 (-)
EHR_08435
Inosine-uridine preferring nucleoside hydrolase (Purine nucleosidase)
EHR_08435
Operon
DOOR ID:
1127088
EHR_08430,
EHR_08435
View Structure
9
1769319-1769386
(+)
fluoride
1769436-1770729 (+)
EHR_08975
Voltage-gated chloride channel family protein
EHR_08975
Single gene
DOOR ID:
3864232
EHR_08975
View Structure
10
2079690-2079836
(-)
glmS
2077836-2079645 (-)
EHR_10685
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
EHR_10685
Single gene
DOOR ID:
3864341
EHR_10685
View Structure
11
2197537-2197705
(+)
ykoK
2198010-2198268 (-)
EHR_11245
EHR_11245
Single gene
DOOR ID:
3864377
EHR_11245
View Structure
12
2232698-2232863
(+)
ykoK
2232976-2234170 (+)
EHR_11440
Cell cycle protein FtsW (FtsW/RodA/SpoVE family cell cycle protein)
EHR_11440
Operon
DOOR ID:
1127199
EHR_11440,
EHR_11445
View Structure
13
2528055-2528152
(-)
purine
2527321-2527903 (-)
EHR_12990
Xanthine phosphoribosyltransferase (XPRTase) (2)
EHR_12990
Operon
DOOR ID:
1127263
EHR_12985,
EHR_12990
View Structure
14
2655328-2655451
(-)
FMN
2654591-2655206 (-)
EHR_13605
Riboflavin transporter
EHR_13605
Single gene
DOOR ID:
3864548
EHR_13605
View Structure
15
2682498-2682665
(-)
ykoK
2681076-2682216 (-)
EHR_13730
Cell cycle protein FtsW
EHR_13730
Operon
DOOR ID:
1127292
EHR_13725,
EHR_13730
View Structure
16
2723795-2723893
(+)
TPP
2723968-2724772 (+)
EHR_13940
Phosphomethylpyrimidine kinase
EHR_13940
Operon
DOOR ID:
1127300
EHR_13940,
EHR_13945,
EHR_13950,
EHR_13955
View Structure
Genome:
Enterococcus hirae ATCC 9790
(
NC_018081.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"258732-258906";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"258447-258558";i:10;s:1:"-";i:11;s:9:"EHR_01440";i:12;s:0:"";i:13;s:9:"EHR_01440";i:14;s:6:"Operon";i:15;s:7:"1126795";i:16;s:29:"EHR_01435;EHR_01440;EHR_01445";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"520659-520705";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"520141-520645";i:10;s:1:"-";i:11;s:9:"EHR_02875";i:12;s:75:"ECF transporter substrate-specific protein QueT (Integral membrane protein)";i:13;s:9:"EHR_02875";i:14;s:11:"Single gene";i:15;s:7:"3863829";i:16;s:9:"EHR_02875";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"767435-767609";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"767858-769454";i:10;s:1:"+";i:11;s:9:"EHR_04040";i:12;s:100:"Amino acid ABC transporter amino acid-binding/permease protein (Amino acid ABC transporter permease)";i:13;s:9:"EHR_04040";i:14;s:6:"Operon";i:15;s:7:"1126900";i:16;s:19:"EHR_04040;EHR_04045";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1078641-1078742";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1078826-1079387";i:10;s:1:"+";i:11;s:9:"EHR_05630";i:12;s:16:"Thiamin permease";i:13;s:9:"EHR_05630";i:14;s:11:"Single gene";i:15;s:7:"3863998";i:16;s:9:"EHR_05630";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1128863-1128941";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1130300-1131776";i:10;s:1:"+";i:11;s:9:"EHR_05830";i:12;s:96:"Drug resistance transporter EmrB/QacA family protein (Major facilitator superfamily transporter)";i:13;s:9:"EHR_05830";i:14;s:11:"Single gene";i:15;s:7:"3864009";i:16;s:9:"EHR_05830";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1448859-1448992";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1449101-1450175";i:10;s:1:"+";i:11;s:9:"EHR_07310";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"EHR_07310";i:14;s:6:"Operon";i:15;s:7:"1127042";i:16;s:45:"EHR_07310;EHR_07315;EHR_07320;EHR_07325(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1461233-1461331";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1461368-1461905";i:10;s:1:"+";i:11;s:9:"EHR_07380";i:12;s:16:"Membrane protein";i:13;s:9:"EHR_07380";i:14;s:11:"Single gene";i:15;s:7:"3864116";i:16;s:9:"EHR_07380";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1670299-1670343";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1669300-1670275";i:10;s:1:"-";i:11;s:9:"EHR_08435";i:12;s:69:"Inosine-uridine preferring nucleoside hydrolase (Purine nucleosidase)";i:13;s:9:"EHR_08435";i:14;s:6:"Operon";i:15;s:7:"1127088";i:16;s:19:"EHR_08430;EHR_08435";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1769319-1769386";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1769436-1770729";i:10;s:1:"+";i:11;s:9:"EHR_08975";i:12;s:45:"Voltage-gated chloride channel family protein";i:13;s:9:"EHR_08975";i:14;s:11:"Single gene";i:15;s:7:"3864232";i:16;s:9:"EHR_08975";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2079690-2079836";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2077836-2079645";i:10;s:1:"-";i:11;s:9:"EHR_10685";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"EHR_10685";i:14;s:11:"Single gene";i:15;s:7:"3864341";i:16;s:9:"EHR_10685";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2197537-2197705";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2198010-2198268";i:10;s:1:"-";i:11;s:9:"EHR_11245";i:12;s:0:"";i:13;s:9:"EHR_11245";i:14;s:11:"Single gene";i:15;s:7:"3864377";i:16;s:9:"EHR_11245";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2232698-2232863";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2232976-2234170";i:10;s:1:"+";i:11;s:9:"EHR_11440";i:12;s:67:"Cell cycle protein FtsW (FtsW/RodA/SpoVE family cell cycle protein)";i:13;s:9:"EHR_11440";i:14;s:6:"Operon";i:15;s:7:"1127199";i:16;s:19:"EHR_11440;EHR_11445";i:17;s:51:"cell cycle [GO:0007049]; cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2528055-2528152";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2527321-2527903";i:10;s:1:"-";i:11;s:9:"EHR_12990";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"EHR_12990";i:14;s:6:"Operon";i:15;s:7:"1127263";i:16;s:19:"EHR_12985;EHR_12990";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2655328-2655451";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2654591-2655206";i:10;s:1:"-";i:11;s:9:"EHR_13605";i:12;s:22:"Riboflavin transporter";i:13;s:9:"EHR_13605";i:14;s:11:"Single gene";i:15;s:7:"3864548";i:16;s:9:"EHR_13605";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2682498-2682665";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2681076-2682216";i:10;s:1:"-";i:11;s:9:"EHR_13730";i:12;s:23:"Cell cycle protein FtsW";i:13;s:9:"EHR_13730";i:14;s:6:"Operon";i:15;s:7:"1127292";i:16;s:19:"EHR_13725;EHR_13730";i:17;s:51:"cell cycle [GO:0007049]; cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_018081.1";i:2;s:29:"Enterococcus hirae ATCC 9790 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2723795-2723893";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2723968-2724772";i:10;s:1:"+";i:11;s:9:"EHR_13940";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"EHR_13940";i:14;s:6:"Operon";i:15;s:7:"1127300";i:16;s:39:"EHR_13940;EHR_13945;EHR_13950;EHR_13955";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}}