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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
305580-305752
(+)
glmS
305940-307755 (+)
SSIL_0272
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SSIL_0272
Single gene
DOOR ID:
3853980
SSIL_0272
View Structure
2
509156-509257
(+)
purine
509286-510929 (+)
SSIL_0460
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
SSIL_0460
Single gene
DOOR ID:
3854076
SSIL_0460
View Structure
3
515998-516099
(+)
purine
516232-517583 (+)
SSIL_0467
Permease
SSIL_0467
Single gene
DOOR ID:
3854080
SSIL_0467
View Structure
4
680970-681078
(+)
TPP
681195-681775 (+)
SSIL_0613
Predicted membrane protein
SSIL_0613
Single gene
DOOR ID:
3854139
SSIL_0613
View Structure
5
868251-868334
(-)
c-di-GMP-II
867540-868210 (-)
SSIL_0791
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SSIL_0791
Single gene
DOOR ID:
3854222
SSIL_0791
View Structure
6
978087-978201
(-)
TPP
976151-977957 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SSIL_0899
Operon
DOOR ID:
1121930
SSIL_0898,
SSIL_0899
(thiC)
View Structure
7
978533-978713
(+)
cobalamin
978789-979863 (+)
SSIL_0900
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
SSIL_0900
Single gene
DOOR ID:
3854274
SSIL_0900
View Structure
8
1019499-1019588
(-)
TPP
1018906-1019425 (-)
SSIL_0941
Predicted membrane protein
SSIL_0941
Single gene
DOOR ID:
3854303
SSIL_0941
View Structure
9
1209588-1209703
(+)
SAM
1209953-1211163 (+)
SSIL_1107
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SSIL_1107
Single gene
DOOR ID:
3854369
SSIL_1107
View Structure
10
1222388-1222485
(-)
glycine
1221339-1221993 (+)
SSIL_1118
Predicted membrane protein; hemolysin III homolog
SSIL_1118
Single gene
DOOR ID:
3854376
SSIL_1118
View Structure
11
1379442-1379620
(+)
lysine
1379698-1380944 (+)
SSIL_1258
Aspartokinase
SSIL_1258
Single gene
DOOR ID:
3854444
SSIL_1258
View Structure
12
1720344-1720436
(+)
glycine
1720698-1721816 (+)
SSIL_1636
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SSIL_1636
Operon
DOOR ID:
1122075
SSIL_1636,
SSIL_1637,
SSIL_1638
View Structure
13
1929905-1930004
(+)
purine
1930097-1931407 (+)
SSIL_1859
Permease
SSIL_1859
Single gene
DOOR ID:
3854665
SSIL_1859
View Structure
14
2178883-2179070
(+)
lysine
2179169-2180021 (+)
SSIL_2108
ABC-type amino acid transport/signal transduction systems; periplasmic component/domain
SSIL_2108
Single gene
DOOR ID:
3854790
SSIL_2108
View Structure
15
2250705-2250812
(-)
SAM
2249605-2250561 (-)
SSIL_2180
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
SSIL_2180
Single gene
DOOR ID:
3854828
SSIL_2180
View Structure
16
2471257-2471335
(-)
glycine
2469658-2471009 (-)
SSIL_2416
Gamma-aminobutyrate permease
SSIL_2416
Single gene
DOOR ID:
3854939
SSIL_2416
View Structure
17
2513653-2513836
(+)
cobalamin
2513979-2514217 (+)
SSIL_2467
Glutaredoxin
SSIL_2467
Single gene
DOOR ID:
3854957
SSIL_2467
View Structure
18
2825135-2825308
(-)
FMN
2824314-2824904 (-)
SSIL_2768
Riboflavin transporter
SSIL_2768
Single gene
DOOR ID:
3855080
SSIL_2768
View Structure
19
3256675-3256815
(-)
ydaO-yuaA
3255150-3256499 (-)
SSIL_3192
Trk-type K+ transport systems; membrane component
SSIL_3192
Operon
DOOR ID:
1122390
SSIL_3191,
SSIL_3192
View Structure
20
3259331-3259528
(-)
yybP-ykoY
3258495-3259275 (-)
SSIL_3194
Membrane protein TerC
SSIL_3194
Single gene
DOOR ID:
3855208
SSIL_3194
View Structure
21
3725243-3725357
(-)
SAM
3723821-3725139 (-)
SSIL_3591
O-acetylhomoserine sulfhydrylase
SSIL_3591
Single gene
DOOR ID:
3855407
SSIL_3591
View Structure
22
3800864-3800965
(-)
purine
3800141-3800728 (-)
SSIL_3662
Xanthine phosphoribosyltransferase (XPRTase) (2)
SSIL_3662
Single gene
DOOR ID:
3855432
SSIL_3662
View Structure
23
3803593-3803773
(-)
lysine
3802042-3803516 (-)
SSIL_3664
Amino acid transporters
SSIL_3664
Single gene
DOOR ID:
3855434
SSIL_3664
View Structure
24
3901000-3901099
(+)
purine
3901136-3902341 (+)
SSIL_3748
Arabinose efflux permease
SSIL_3748
Single gene
DOOR ID:
3855467
SSIL_3748
View Structure
Genome:
Solibacillus silvestris StLB046
(
NC_018065.1
);
Phylum:
Firmicutes
a:25:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"305580-305752";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"305940-307755";i:10;s:1:"+";i:11;s:9:"SSIL_0272";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"SSIL_0272";i:14;s:11:"Single gene";i:15;s:7:"3853980";i:16;s:9:"SSIL_0272";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"509156-509257";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"509286-510929";i:10;s:1:"+";i:11;s:9:"SSIL_0460";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:9:"SSIL_0460";i:14;s:11:"Single gene";i:15;s:7:"3854076";i:16;s:9:"SSIL_0460";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"515998-516099";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"516232-517583";i:10;s:1:"+";i:11;s:9:"SSIL_0467";i:12;s:8:"Permease";i:13;s:9:"SSIL_0467";i:14;s:11:"Single gene";i:15;s:7:"3854080";i:16;s:9:"SSIL_0467";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"680970-681078";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"681195-681775";i:10;s:1:"+";i:11;s:9:"SSIL_0613";i:12;s:26:"Predicted membrane protein";i:13;s:9:"SSIL_0613";i:14;s:11:"Single gene";i:15;s:7:"3854139";i:16;s:9:"SSIL_0613";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"868251-868334";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"867540-868210";i:10;s:1:"-";i:11;s:9:"SSIL_0791";i:12;s:87:"Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain";i:13;s:9:"SSIL_0791";i:14;s:11:"Single gene";i:15;s:7:"3854222";i:16;s:9:"SSIL_0791";i:17;s:152:"phosphorelay signal transduction system [GO:0000160]; regulation of transcription; DNA-templated [GO:0006355]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"978087-978201";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"976151-977957";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"SSIL_0899";i:14;s:6:"Operon";i:15;s:7:"1121930";i:16;s:25:"SSIL_0898;SSIL_0899(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"978533-978713";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"978789-979863";i:10;s:1:"+";i:11;s:9:"SSIL_0900";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:9:"SSIL_0900";i:14;s:11:"Single gene";i:15;s:7:"3854274";i:16;s:9:"SSIL_0900";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1019499-1019588";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1018906-1019425";i:10;s:1:"-";i:11;s:9:"SSIL_0941";i:12;s:26:"Predicted membrane protein";i:13;s:9:"SSIL_0941";i:14;s:11:"Single gene";i:15;s:7:"3854303";i:16;s:9:"SSIL_0941";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1209588-1209703";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1209953-1211163";i:10;s:1:"+";i:11;s:9:"SSIL_1107";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"SSIL_1107";i:14;s:11:"Single gene";i:15;s:7:"3854369";i:16;s:9:"SSIL_1107";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1222388-1222485";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1221339-1221993";i:10;s:1:"+";i:11;s:9:"SSIL_1118";i:12;s:49:"Predicted membrane protein; hemolysin III homolog";i:13;s:9:"SSIL_1118";i:14;s:11:"Single gene";i:15;s:7:"3854376";i:16;s:9:"SSIL_1118";i:17;s:22:"cytolysis [GO:0019835]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1379442-1379620";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1379698-1380944";i:10;s:1:"+";i:11;s:9:"SSIL_1258";i:12;s:14:"Aspartokinase ";i:13;s:9:"SSIL_1258";i:14;s:11:"Single gene";i:15;s:7:"3854444";i:16;s:9:"SSIL_1258";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1720344-1720436";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1720698-1721816";i:10;s:1:"+";i:11;s:9:"SSIL_1636";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"SSIL_1636";i:14;s:6:"Operon";i:15;s:7:"1122075";i:16;s:29:"SSIL_1636;SSIL_1637;SSIL_1638";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1929905-1930004";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1930097-1931407";i:10;s:1:"+";i:11;s:9:"SSIL_1859";i:12;s:8:"Permease";i:13;s:9:"SSIL_1859";i:14;s:11:"Single gene";i:15;s:7:"3854665";i:16;s:9:"SSIL_1859";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2178883-2179070";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2179169-2180021";i:10;s:1:"+";i:11;s:9:"SSIL_2108";i:12;s:87:"ABC-type amino acid transport/signal transduction systems; periplasmic component/domain";i:13;s:9:"SSIL_2108";i:14;s:11:"Single gene";i:15;s:7:"3854790";i:16;s:9:"SSIL_2108";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2250705-2250812";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2249605-2250561";i:10;s:1:"-";i:11;s:9:"SSIL_2180";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"SSIL_2180";i:14;s:11:"Single gene";i:15;s:7:"3854828";i:16;s:9:"SSIL_2180";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2471257-2471335";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2469658-2471009";i:10;s:1:"-";i:11;s:9:"SSIL_2416";i:12;s:28:"Gamma-aminobutyrate permease";i:13;s:9:"SSIL_2416";i:14;s:11:"Single gene";i:15;s:7:"3854939";i:16;s:9:"SSIL_2416";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2513653-2513836";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2513979-2514217";i:10;s:1:"+";i:11;s:9:"SSIL_2467";i:12;s:12:"Glutaredoxin";i:13;s:9:"SSIL_2467";i:14;s:11:"Single gene";i:15;s:7:"3854957";i:16;s:9:"SSIL_2467";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2825135-2825308";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2824314-2824904";i:10;s:1:"-";i:11;s:9:"SSIL_2768";i:12;s:22:"Riboflavin transporter";i:13;s:9:"SSIL_2768";i:14;s:11:"Single gene";i:15;s:7:"3855080";i:16;s:9:"SSIL_2768";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_018065.1";i:2;s:31:"Solibacillus silvestris StLB046";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3256675-3256815";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3255150-3256499";i:10;s:1:"-";i:11;s:9:"SSIL_3192";i:12;s:49:"Trk-type K+ transport systems; 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