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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
115764-115851
(+)
glycine
116010-117270 (+)
A458_00590
D-amino acid dehydrogenase small subunit
A458_00590
Single gene
DOOR ID:
3852210
A458_00590
View Structure
2
348750-348833
(-)
SAH
347318-348725 (-)
A458_01625
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
A458_01625
Operon
DOOR ID:
1296592
A458_01625,
A458_01620
View Structure
3
511488-511594
(+)
TPP
511694-513578 (+)
A458_02335
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
A458_02335
Single gene
DOOR ID:
3852327
A458_02335
View Structure
4
1545329-1545545
(+)
cobalamin
1545662-1547516 (+)
A458_07165
TonB-dependent receptor
A458_07165
Operon
DOOR ID:
1296812
A458_07175,
A458_07170,
A458_07165
View Structure
5
2344772-2344871
(+)
ykkC-yxkD
2345041-2345857 (+)
A458_10750
ABC transporter permease
A458_10750
Operon
DOOR ID:
1296951
A458_10765,
A458_10760,
A458_10755,
A458_10750
View Structure
6
2348206-2348252
(+)
mini-ykkC
2348275-2351980 (+)
A458_10770
A458_10770
Single gene
DOOR ID:
3852991
A458_10770
View Structure
7
2356173-2356275
(+)
ykkC-yxkD
2356324-2357326 (+)
A458_10785
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
A458_10785
Operon
DOOR ID:
1296952
A458_10835,
A458_10830,
A458_10825,
A458_10820,
A458_10815,
A458_10810,
A458_10805,
A458_10800,
A458_10795,
A458_10790,
A458_10785
View Structure
8
3069653-3069700
(-)
mini-ykkC
3069311-3069632 (-)
A458_14065
A458_14065
Single gene
DOOR ID:
3853230
A458_14065
View Structure
9
3498489-3498612
(+)
yybP-ykoY
3498702-3499290 (+)
A458_16175
A458_16175
Single gene
DOOR ID:
3853409
A458_16175
View Structure
10
3790339-3790555
(+)
cobalamin
3790652-3792512 (+)
A458_17600
TonB-dependent receptor; plug
A458_17600
Single gene
DOOR ID:
3853514
A458_17600
View Structure
11
3799622-3799760
(-)
FMN
3798838-3799501 (-)
A458_17650
Riboflavin synthase subunit alpha
A458_17650
Operon
DOOR ID:
1297224
A458_17650,
A458_17645,
A458_17640
(ribH)
,
A458_17635
(nusB)
,
A458_17630,
A458_17625
View Structure
12
4172888-4172953
(-)
SAH
4172049-4172634 (+)
A458_19415
DNA-binding response regulator CorR
A458_19415
Single gene
DOOR ID:
3853646
A458_19415
View Structure
Genome:
Pseudomonas stutzeri CCUG 29243
(
NC_018028.1
);
Phylum:
Gammaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"511488-511594";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"511694-513578";i:10;s:1:"+";i:11;s:10:"A458_02335";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"A458_02335";i:14;s:11:"Single gene";i:15;s:7:"3852327";i:16;s:10:"A458_02335";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1545329-1545545";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1545662-1547516";i:10;s:1:"+";i:11;s:10:"A458_07165";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"A458_07165";i:14;s:6:"Operon";i:15;s:7:"1296812";i:16;s:32:"A458_07175;A458_07170;A458_07165";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2344772-2344871";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2345041-2345857";i:10;s:1:"+";i:11;s:10:"A458_10750";i:12;s:24:"ABC transporter permease";i:13;s:10:"A458_10750";i:14;s:6:"Operon";i:15;s:7:"1296951";i:16;s:43:"A458_10765;A458_10760;A458_10755;A458_10750";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2348206-2348252";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2348275-2351980";i:10;s:1:"+";i:11;s:10:"A458_10770";i:12;s:0:"";i:13;s:10:"A458_10770";i:14;s:11:"Single gene";i:15;s:7:"3852991";i:16;s:10:"A458_10770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2356173-2356275";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2356324-2357326";i:10;s:1:"+";i:11;s:10:"A458_10785";i:12;s:65:"Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein";i:13;s:10:"A458_10785";i:14;s:6:"Operon";i:15;s:7:"1296952";i:16;s:120:"A458_10835;A458_10830;A458_10825;A458_10820;A458_10815;A458_10810;A458_10805;A458_10800;A458_10795;A458_10790;A458_10785";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3069653-3069700";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3069311-3069632";i:10;s:1:"-";i:11;s:10:"A458_14065";i:12;s:0:"";i:13;s:10:"A458_14065";i:14;s:11:"Single gene";i:15;s:7:"3853230";i:16;s:10:"A458_14065";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3498489-3498612";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3498702-3499290";i:10;s:1:"+";i:11;s:10:"A458_16175";i:12;s:0:"";i:13;s:10:"A458_16175";i:14;s:11:"Single gene";i:15;s:7:"3853409";i:16;s:10:"A458_16175";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3790339-3790555";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3790652-3792512";i:10;s:1:"+";i:11;s:10:"A458_17600";i:12;s:29:"TonB-dependent receptor; plug";i:13;s:10:"A458_17600";i:14;s:11:"Single gene";i:15;s:7:"3853514";i:16;s:10:"A458_17600";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3799622-3799760";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3798838-3799501";i:10;s:1:"-";i:11;s:10:"A458_17650";i:12;s:34:"Riboflavin synthase subunit alpha ";i:13;s:10:"A458_17650";i:14;s:6:"Operon";i:15;s:7:"1297224";i:16;s:77:"A458_17650;A458_17645;A458_17640(ribH);A458_17635(nusB);A458_17630;A458_17625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018028.1";i:2;s:32:"Pseudomonas stutzeri CCUG 29243 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4172888-4172953";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4172049-4172634";i:10;s:1:"+";i:11;s:10:"A458_19415";i:12;s:35:"DNA-binding response regulator CorR";i:13;s:10:"A458_19415";i:14;s:11:"Single gene";i:15;s:7:"3853646";i:16;s:10:"A458_19415";i:17;s:98:"regulation of transcription; DNA-templated [GO:0006355]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}}
