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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
215446-215651
(-)
cobalamin
213772-215188 (-)
Desti_0174
Radical SAM additional 4Fe4S-binding domain protein
Desti_0174
Single gene
DOOR ID:
3848380
Desti_0174
View Structure
2
806259-806445
(-)
cobalamin
805441-806053 (-)
Desti_0704
ABC-type Co2+ transport system; permease component
Desti_0704
Single gene
DOOR ID:
3848601
Desti_0704
View Structure
3
829842-829964
(+)
cobalamin
830576-831239 (+)
Desti_0724
Desti_0724
Operon
DOOR ID:
1119853
Desti_0724,
Desti_0725,
Desti_0726,
Desti_0727,
Desti_0728
View Structure
4
869519-869588
(-)
fluoride
867906-869391 (-)
Desti_0760
NhaP-type Na+(K+)/H+ antiporter
Desti_0760
Single gene
DOOR ID:
3848621
Desti_0760
View Structure
5
1168079-1168259
(-)
cobalamin
1167868-1168078 (-)
Desti_0990
Desti_0990
Operon
DOOR ID:
1119907
Desti_0989,
Desti_0990
View Structure
6
2603977-2604039
(-)
fluoride
2602548-2603850 (-)
Desti_2164
Enolase
Desti_2164
Operon
DOOR ID:
1120161
Desti_2162,
Desti_2163,
Desti_2164
View Structure
7
3946044-3946232
(+)
cobalamin
3946328-3946553 (-)
Desti_3352
Desti_3352
Single gene
DOOR ID:
3849651
Desti_3352
View Structure
8
3961130-3961316
(-)
cobalamin
3959785-3961006 (-)
Desti_3363
TonB family protein
Desti_3363
Operon
DOOR ID:
1120416
Desti_3358,
Desti_3359,
Desti_3360,
Desti_3361,
Desti_3362,
Desti_3363
View Structure
9
5686116-5686237
(+)
cobalamin
5686326-5686893 (+)
Desti_4916
Desti_4916
Operon
DOOR ID:
1120747
Desti_4916,
Desti_4917
View Structure
10
6020087-6020205
(-)
yybP-ykoY
6019176-6019932 (-)
Desti_5208
Membrane protein TerC; possibly involved in tellurium resistance
Desti_5208
Single gene
DOOR ID:
3850368
Desti_5208
View Structure
11
6448524-6448708
(+)
cobalamin
6449004-6449553 (+)
Desti_5589
Bifunctional adenosylcobalamin biosynthesis protein (2)
Desti_5589
Operon
DOOR ID:
1120872
Desti_5589,
Desti_5590,
Desti_5591,
Desti_5592,
Desti_5593,
Desti_5594,
Desti_5595,
Desti_5596
View Structure
Genome:
Desulfomonile tiedjei DSM 6799
(
NC_018025.1
);
Phylum:
delta/epsilon subdivisions
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"215446-215651";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"213772-215188";i:10;s:1:"-";i:11;s:10:"Desti_0174";i:12;s:51:"Radical SAM additional 4Fe4S-binding domain protein";i:13;s:10:"Desti_0174";i:14;s:11:"Single gene";i:15;s:7:"3848380";i:16;s:10:"Desti_0174";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"806259-806445";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"805441-806053";i:10;s:1:"-";i:11;s:10:"Desti_0704";i:12;s:50:"ABC-type Co2+ transport system; permease component";i:13;s:10:"Desti_0704";i:14;s:11:"Single gene";i:15;s:7:"3848601";i:16;s:10:"Desti_0704";i:17;s:43:"transition metal ion transport [GO:0000041]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"829842-829964";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"830576-831239";i:10;s:1:"+";i:11;s:10:"Desti_0724";i:12;s:0:"";i:13;s:10:"Desti_0724";i:14;s:6:"Operon";i:15;s:7:"1119853";i:16;s:54:"Desti_0724;Desti_0725;Desti_0726;Desti_0727;Desti_0728";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"869519-869588";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"867906-869391";i:10;s:1:"-";i:11;s:10:"Desti_0760";i:12;s:31:"NhaP-type Na+(K+)/H+ antiporter";i:13;s:10:"Desti_0760";i:14;s:11:"Single gene";i:15;s:7:"3848621";i:16;s:10:"Desti_0760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1168079-1168259";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1167868-1168078";i:10;s:1:"-";i:11;s:10:"Desti_0990";i:12;s:0:"";i:13;s:10:"Desti_0990";i:14;s:6:"Operon";i:15;s:7:"1119907";i:16;s:21:"Desti_0989;Desti_0990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2603977-2604039";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2602548-2603850";i:10;s:1:"-";i:11;s:10:"Desti_2164";i:12;s:7:"Enolase";i:13;s:10:"Desti_2164";i:14;s:6:"Operon";i:15;s:7:"1120161";i:16;s:32:"Desti_2162;Desti_2163;Desti_2164";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3946044-3946232";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3946328-3946553";i:10;s:1:"-";i:11;s:10:"Desti_3352";i:12;s:0:"";i:13;s:10:"Desti_3352";i:14;s:11:"Single gene";i:15;s:7:"3849651";i:16;s:10:"Desti_3352";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3961130-3961316";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3959785-3961006";i:10;s:1:"-";i:11;s:10:"Desti_3363";i:12;s:19:"TonB family protein";i:13;s:10:"Desti_3363";i:14;s:6:"Operon";i:15;s:7:"1120416";i:16;s:65:"Desti_3358;Desti_3359;Desti_3360;Desti_3361;Desti_3362;Desti_3363";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5686116-5686237";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5686326-5686893";i:10;s:1:"+";i:11;s:10:"Desti_4916";i:12;s:0:"";i:13;s:10:"Desti_4916";i:14;s:6:"Operon";i:15;s:7:"1120747";i:16;s:21:"Desti_4916;Desti_4917";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"6020087-6020205";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"6019176-6019932";i:10;s:1:"-";i:11;s:10:"Desti_5208";i:12;s:64:"Membrane protein TerC; possibly involved in tellurium resistance";i:13;s:10:"Desti_5208";i:14;s:11:"Single gene";i:15;s:7:"3850368";i:16;s:10:"Desti_5208";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018025.1";i:2;s:31:"Desulfomonile tiedjei DSM 6799 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"6448524-6448708";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6449004-6449553";i:10;s:1:"+";i:11;s:10:"Desti_5589";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:10:"Desti_5589";i:14;s:6:"Operon";i:15;s:7:"1120872";i:16;s:87:"Desti_5589;Desti_5590;Desti_5591;Desti_5592;Desti_5593;Desti_5594;Desti_5595;Desti_5596";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}}
