Genome: Desulfitobacterium dehalogenans ATCC 51507 (NC_018017.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 356718-356903 (-)cobalamin354217-356587 (-)Desde_0346

Ribonucleoside-triphosphate reductase class III catalytic subunit 		Desde_0346Operon

DOOR ID: 1116382		Desde_0345,
Desde_0346		 View Structure
2 639019-639165 (+)ydaO-yuaA639281-640166 (+)Desde_0619

Amino acid ABC transporter substrate-binding protein; PAAT family		Desde_0619Operon

DOOR ID: 1116437		Desde_0619,
Desde_0620,
Desde_0621,
Desde_0622		 View Structure
3 729441-729643 (+)glmS729909-731733 (+)Desde_0699

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desde_0699Single gene

DOOR ID: 3841836		Desde_0699 View Structure
4 771936-772042 (+)TPP772131-772428 (+)Desde_0746

Desde_0746Operon

DOOR ID: 1116463		Desde_0746,
Desde_0747,
Desde_0748,
Desde_0749		 View Structure
5 977070-977155 (-)c-di-GMP-I975877-976939 (-)Desde_0950

HD-GYP domain-containing protein		Desde_0950single gene

DOOR ID: 3841939		Desde_0950 View Structure
6 1003348-1003445 (+)ykkC-yxkD1003509-1003851 (+)Desde_0979

Cation/cationic drug transporter		Desde_0979Operon

DOOR ID: 1116507		Desde_0979,
Desde_0980		 View Structure
7 1041274-1041364 (+)glycine1041505-1041808 (+)Desde_1015

Desde_1015Operon

DOOR ID: 1116517		Desde_1015,
Desde_1016		 View Structure
8 1233482-1233661 (+)cobalamin1233826-1235053 (+)Desde_1228

Precorrin-6y C5;15-methyltransferase (Decarboxylating); CbiE subunit;precorrin-6Y C5;15-methyltransferase (Decarboxylating); CbiT subunit (32)		Desde_1228Operon

DOOR ID: 1116556		Desde_1228,
Desde_1229		 View Structure
9 1283134-1283260 (-)ydaO-yuaA1281783-1283025 (-)Desde_1272

Glutamate 2;3-aminomutase 		Desde_1272Single gene

DOOR ID: 3842038		Desde_1272 View Structure
10 1312856-1312954 (-)SAM1311620-1312760 (-)Desde_1303

Cystathionine beta-lyase/cystathionine gamma-synthase		Desde_1303Single gene

DOOR ID: 3842052		Desde_1303 View Structure
11 1314540-1314641 (+)SAM1314748-1315777 (+)Desde_1306

Homoserine dehydrogenase 		Desde_1306Single gene

DOOR ID: 3842053		Desde_1306 View Structure
12 1331439-1331564 (+)MOCO1331637-1332609 (+)Desde_1320

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		Desde_1320Operon

DOOR ID: 1116574		Desde_1320,
Desde_1321,
Desde_1322,
Desde_1323		 View Structure
13 1366272-1366373 (+)purine1366643-1370453 (+)Desde_1366

Phosphoribosylformylglycinamidine synthase 		Desde_1366Operon

DOOR ID: 1116580		Desde_1366,
Desde_1367,
Desde_1368,
Desde_1369,
Desde_1370,
Desde_1371,
Desde_1372,
Desde_1373		 View Structure
14 1385593-1385693 (-)SAM1384489-1385512 (-)Desde_1380

Methionine import ATP-binding protein MetN 		Desde_1380Operon

DOOR ID: 1116581		Desde_1379,
Desde_1380		 View Structure
15 1438552-1438731 (+)cobalamin1438872-1439568 (+)Desde_1427

Desde_1427Single gene

DOOR ID: 3842088		Desde_1427 View Structure
16 1439729-1439861 (+)MOCO1440068-1440827 (+)Desde_1428

Nitrogenase subunit NifH (ATPase)		Desde_1428Single gene

DOOR ID: 3842089		Desde_1428 View Structure
17 1519898-1520046 (-)FMN1518794-1519757 (-)Desde_1507

Putative permease; DMT superfamily		Desde_1507Single gene

DOOR ID: 3842125		Desde_1507 View Structure
18 1571630-1571726 (+)purine1571811-1573512 (+)Desde_1574

Adenine deaminase (Adenase) (Adenine aminase) 		Desde_1574Single gene

DOOR ID: 3842146		Desde_1574 View Structure
19 1683581-1683664 (+)c-di-GMP-II1685600-1687355 (+)Desde_1684

Thioredoxin domain protein		Desde_1684Single gene

DOOR ID: 3842188		Desde_1684 View Structure
20 1729184-1729275 (+)c-di-GMP-I1729721-1731584 (+)Desde_1726

AAA+ family ATPase		Desde_1726single gene

DOOR ID: 3842208		Desde_1726 View Structure
21 1841862-1842044 (+)lysine1842172-1843021 (+)Desde_1825

Amino acid ABC transporter substrate-binding protein; PAAT family		Desde_1825Single gene

DOOR ID: 3842244		Desde_1825 View Structure
22 1889490-1889577 (+)Nico1889632-1890508 (+)Desde_1867

Cation diffusion facilitator family transporter		Desde_1867Single gene

DOOR ID: 3842262		Desde_1867 View Structure
23 1998365-1998464 (+)ykkC-yxkD1998578-1999460 (+)Desde_1972

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Desde_1972Operon

DOOR ID: 1116710		Desde_1972,
Desde_1973,
Desde_1974,
Desde_1975		 View Structure
24 2042857-2042969 (+)TPP2043037-2044336 (+)Desde_2009

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Desde_2009Operon

DOOR ID: 1116719		Desde_2009,
Desde_2010,
Desde_2011,
Desde_2012		 View Structure
25 2103675-2103810 (-)ydaO-yuaA2102241-2103672 (-)Desde_2073

Cell wall-associated hydrolase; invasion-associated protein		Desde_2073Operon

DOOR ID: 1116731		Desde_2072,
Desde_2073		 View Structure
26 2110188-2110374 (+)cobalamin2110574-2111315 (+)Desde_2108

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desde_2108Operon

DOOR ID: 1116733		Desde_2108,
Desde_2109		 View Structure
27 2231239-2231375 (-)MOCO2228754-2230164 (+)Desde_2219

Protein containing von Willebrand factor type A (VWA) domain		Desde_2219Operon

DOOR ID: 1116754		Desde_2218,
Desde_2219		 View Structure
28 2278355-2278469 (+)FMN2278600-2279698 (+)Desde_2262

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desde_2262Operon

DOOR ID: 1116760		Desde_2262,
Desde_2263,
Desde_2264,
Desde_2265		 View Structure
29 2523448-2523584 (-)ydaO-yuaA2522652-2523444 (-)Desde_2511

Cell wall-associated hydrolase; invasion-associated protein		Desde_2511Single gene

DOOR ID: 3842501		Desde_2511 View Structure
30 2737527-2737671 (+)cobalamin2737787-2738759 (+)Desde_2717

ABC-type Fe3+-hydroxamate transport system; periplasmic component		Desde_2717Single gene

DOOR ID: 3842597		Desde_2717 View Structure
31 2768940-2769117 (+)cobalamin2769216-2770356 (+)Desde_2751

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Desde_2751Operon

DOOR ID: 1116847		Desde_2751,
Desde_2752,
Desde_2753		 View Structure
32 2776953-2777092 (+)yybP-ykoY2777147-2777837 (+)Desde_2759

Integral membrane protein; YjbE family		Desde_2759Single gene

DOOR ID: 3842610		Desde_2759 View Structure
33 2832924-2833005 (+)yybP-ykoY2833140-2833833 (+)Desde_2817

Integral membrane protein; YjbE family		Desde_2817Single gene

DOOR ID: 3842634		Desde_2817 View Structure
34 2858117-2858211 (-)c-di-GMP-I2856799-2857969 (-)Desde_2842

Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA)		Desde_2842single gene

DOOR ID: 3842640		Desde_2842 View Structure
35 3095572-3095666 (-)ykkC-yxkD3095160-3095496 (-)Desde_3094

Cation/cationic drug transporter		Desde_3094Operon

DOOR ID: 1116912		Desde_3093,
Desde_3094		 View Structure
36 3332877-3333059 (-)cobalamin3331993-3332767 (-)Desde_3340

Alpha-ribazole kinase 		Desde_3340Operon

DOOR ID: 1116960		Desde_3337,
Desde_3338,
Desde_3339,
Desde_3340		 View Structure
37 3420659-3420766 (-)glycine3419352-3420444 (-)Desde_3416

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Desde_3416Operon

DOOR ID: 1116977		Desde_3413,
Desde_3414,
Desde_3415,
Desde_3416		 View Structure
38 3627516-3627647 (-)MOCO3625948-3626839 (-)Desde_3621

Glycine--tRNA ligase alpha subunit (4) (Glycyl-tRNA synthetase alpha subunit) (GlyRS)		Desde_3621Operon

DOOR ID: 1117018		Desde_3620,
Desde_3621		 View Structure
39 3991860-3991966 (-)SAM3990859-3991783 (-)Desde_3934

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Desde_3934Operon

DOOR ID: 1117087		Desde_3933,
Desde_3934		 View Structure
40 4044833-4044917 (+)c-di-GMP-I4045071-4047033 (+)Desde_3985

Methyl-accepting chemotaxis protein		Desde_3985single gene

DOOR ID: 3842968		Desde_3985 View Structure
41 4244880-4245054 (-)lysine4243503-4244754 (-)Desde_4169

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Desde_4169Single gene

DOOR ID: 3843027		Desde_4169 View Structure
42 4251017-4251089 (+)glycine4251346-4252729 (+)Desde_4177

Amino acid carrier protein		Desde_4177Single gene

DOOR ID: 3843035		Desde_4177 View Structure
43 4251099-4251194 (+)glycine4251346-4252729 (+)Desde_4177

Amino acid carrier protein		Desde_4177Single gene

DOOR ID: 3843035		Desde_4177 View Structure