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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
776768-777016
(+)
cobalamin
777190-779077 (+)
Thivi_0715
TonB-dependent vitamin B12 receptor
Thivi_0715
Single gene
DOOR ID:
3835758
Thivi_0715
View Structure
2
1750091-1750190
(-)
glycine
1749226-1749499 (+)
Thivi_1612
Thivi_1612
Single gene
DOOR ID:
3836057
Thivi_1612
View Structure
3
1812873-1813105
(-)
cobalamin
1811211-1812618 (-)
Thivi_1674
Transposase family protein
Thivi_1674
Operon
DOOR ID:
1113582
Thivi_1673,
Thivi_1674
View Structure
4
2001205-2001297
(+)
glycine
2001597-2002695 (+)
Thivi_1838
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Thivi_1838
Operon
DOOR ID:
1113625
Thivi_1838,
Thivi_1839
View Structure
5
3775582-3775665
(+)
TPP
3775884-3777777 (+)
Thivi_3455
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Thivi_3455
Operon
DOOR ID:
1113959
Thivi_3455,
Thivi_3456,
Thivi_3457,
Thivi_3458
View Structure
6
3913675-3913761
(+)
SAH
3913783-3915190 (+)
Thivi_3579
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Thivi_3579
Operon
DOOR ID:
1113983
Thivi_3579,
Thivi_3580
View Structure
Genome:
Thiocystis violascens DSM 198
(
NC_018012.1
);
Phylum:
Gammaproteobacteria
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