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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
32843-32952
(-)
ZMP-ZTP
31519-31969 (-)
Alfi_0030
Acetyltransferase; N-acetylglutamate synthase
Alfi_0030
Operon
DOOR ID:
1112601
Alfi_0029,
Alfi_0030,
Alfi_0031
View Structure
2
443988-444202
(-)
cobalamin
442369-443809 (-)
Alfi_0391
Alfi_0391
Single gene
DOOR ID:
3834617
Alfi_0391
View Structure
3
1069234-1069430
(-)
cobalamin
1067407-1069090 (-)
Alfi_0988
Putative permease
Alfi_0988
Single gene
DOOR ID:
3834783
Alfi_0988
View Structure
4
2522028-2522225
(+)
cobalamin
2522368-2524051 (+)
Alfi_2251
Putative permease
Alfi_2251
Single gene
DOOR ID:
3835123
Alfi_2251
View Structure
5
2550075-2550271
(-)
cobalamin
2547729-2549937 (-)
Alfi_2275
Anaerobic ribonucleoside-triphosphate reductase
Alfi_2275
Operon
DOOR ID:
1113038
Alfi_2274,
Alfi_2275
View Structure
6
2559942-2560141
(-)
cobalamin
2558805-2559828 (-)
Alfi_2284
Alfi_2284
Operon
DOOR ID:
1113041
Alfi_2282,
Alfi_2283,
Alfi_2284
View Structure
7
2761764-2761956
(-)
cobalamin
2760691-2761609 (-)
Alfi_2442
Alfi_2442
Single gene
DOOR ID:
3835167
Alfi_2442
View Structure
8
2891350-2891526
(+)
cobalamin
2891716-2892427 (+)
Alfi_2559
Alfi_2559
Single gene
DOOR ID:
3835211
Alfi_2559
View Structure
9
2987323-2987417
(-)
TPP
2984747-2987282 (-)
Alfi_2651
Outer membrane receptor protein
Alfi_2651
Operon
DOOR ID:
1113121
Alfi_2650,
Alfi_2651
View Structure
Genome:
Alistipes finegoldii DSM 17242
(
NC_018011.1
);
Phylum:
Bacteroidetes/Chlorobi group
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