Genome: Pseudomonas putida ND6 (NC_017986.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 5685-5902 (-)cobalamin4520-5585 (-)YSA_00006

Cobalamin biosynthesis protein CobW		YSA_00006Operon

DOOR ID: 1293392		YSA_00006,
YSA_00004		 View Structure
2 343221-343282 (+)fluoride343423-343807 (+)YSA_00635

Putative fluoride ion transporter CrcB		YSA_00635Operon

DOOR ID: 1293464		YSA_00637,
YSA_00636,
YSA_00635		 View Structure
3 495367-495575 (+)cobalamin495623-497810 (+)YSA_01004

TonB-dependent siderophore receptor		YSA_01004Single gene

DOOR ID: 3826696		YSA_01004 View Structure
4 499123-499321 (+)cobalamin499431-500442 (+)YSA_01008

Periplasmic binding protein		YSA_01008Operon

DOOR ID: 1293502		YSA_01010,
YSA_01009,
YSA_01008		 View Structure
5 1286537-1286588 (+)mini-ykkC1286613-1286931 (+)YSA_02381

YSA_02381Single gene

DOOR ID: 3827008		YSA_02381 View Structure
6 1316741-1316962 (-)cobalamin1316009-1316621 (-)YSA_02434

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		YSA_02434Operon

DOOR ID: 1293666		YSA_02421,
YSA_02423,
YSA_02426,
YSA_02427,
YSA_02428,
YSA_02429,
YSA_02430,
YSA_02431,
YSA_02433,
YSA_02434		 View Structure
7 2118215-2118321 (-)TPP2116179-2118063 (-)YSA_03949

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		YSA_03949Single gene

DOOR ID: 3827303		YSA_03949 View Structure
8 2181297-2181393 (+)SAH2181401-2182823 (+)YSA_04052

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		YSA_04052Single gene

DOOR ID: 3827327		YSA_04052 View Structure
9 2385542-2385611 (-)SAH2383570-2384992 (+)YSA_04400

YSA_04400Operon

DOOR ID: 1293898		YSA_04400,
YSA_04401		 View Structure
10 3283142-3283283 (-)FMN3282410-3283061 (-)YSA_06072

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		YSA_06072Single gene

DOOR ID: 3827727		YSA_06072 View Structure
11 3539954-3540093 (-)yybP-ykoY3539280-3539865 (-)YSA_06586

YSA_06586Single gene

DOOR ID: 3827835		YSA_06586 View Structure
12 5721921-5722035 (+)TPP5722757-5723423 (+)YSA_10690

Aminopyrimidine aminohydrolase 		YSA_10690Operon

DOOR ID: 1294633		YSA_10688,
YSA_10690		 View Structure
13 5981655-5981878 (+)cobalamin5982168-5982855 (+)YSA_11208

Cobalt transporter subunit CbtA		YSA_11208Operon

DOOR ID: 1294694		YSA_11208,
YSA_11210		 View Structure