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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
151673-151847
(-)
lysine
149942-151535 (-)
HMPREF0351_10153
Amino acid ABC superfamily ATP binding cassette transporter; membrane protein
HMPREF0351_10153
Operon
DOOR ID:
1106950
HMPREF0351_10152,
HMPREF0351_10153
View Structure
2
641269-641443
(+)
ykoK
641784-644433 (+)
mgtA
p-ATPase superfamily P-type ATPase magnesium (Mg2+) transporter
HMPREF0351_10642
Single gene
DOOR ID:
3824286
HMPREF0351_10642
(mgtA)
View Structure
3
1085744-1085869
(+)
FMN
1085991-1086603 (+)
HMPREF0351_11097
Riboflavin transporter
HMPREF0351_11097
Single gene
DOOR ID:
3824435
HMPREF0351_11097
View Structure
4
1151003-1151107
(+)
TPP
1151180-1151924 (+)
HMPREF0351_11165
ABC superfamily ATP binding cassette transporter; membrane protein
HMPREF0351_11165
Operon
DOOR ID:
1107154
HMPREF0351_11165,
HMPREF0351_11166,
HMPREF0351_11167,
HMPREF0351_11168
View Structure
5
1183132-1183229
(+)
purine
1183245-1183926 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
HMPREF0351_11199
Operon
DOOR ID:
1107160
HMPREF0351_11199
(xpt)
,
HMPREF0351_11200
(pbuX)
View Structure
6
1449534-1449700
(-)
ykoK
1448245-1449409 (-)
ftsW3
FtsW/RodA/SpoVE family cell division protein
HMPREF0351_11459
Single gene
DOOR ID:
3824573
HMPREF0351_11459
(ftsW3)
View Structure
7
1597925-1598072
(+)
glmS
1598115-1599921 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
HMPREF0351_11624
Single gene
DOOR ID:
3824617
HMPREF0351_11624
(glmS)
View Structure
8
1868284-1868350
(-)
fluoride
1866960-1868229 (-)
HMPREF0351_11906
Chloride carrier/channel (ClC) family transporter
HMPREF0351_11906
Single gene
DOOR ID:
3824719
HMPREF0351_11906
View Structure
9
2007885-2007929
(+)
PreQ1
2007952-2008927 (+)
rihB
Purine nucleosidase
HMPREF0351_12060
Operon
DOOR ID:
1107354
HMPREF0351_12060
(rihB)
,
HMPREF0351_12061
View Structure
10
2197017-2197115
(-)
THF
2196442-2196988 (-)
HMPREF0351_12248
Integral membrane protein
HMPREF0351_12248
Single gene
DOOR ID:
3824828
HMPREF0351_12248
View Structure
11
2341469-2341515
(-)
PreQ1
2340952-2341456 (-)
HMPREF0351_12401
Integral membrane protein
HMPREF0351_12401
Single gene
DOOR ID:
3824881
HMPREF0351_12401
View Structure
12
2509287-2509366
(-)
SMK_box
2506493-2508068 (-)
HMPREF0351_12539
MFS family major facilitator transporter; drug resistance transporter
HMPREF0351_12539
Operon
DOOR ID:
1107460
HMPREF0351_12539,
HMPREF0351_12540
(metK)
View Structure
13
2558499-2558601
(-)
TPP
2557863-2558433 (-)
HMPREF0351_12578
PTT family thiamin transporter
HMPREF0351_12578
Single gene
DOOR ID:
3824930
HMPREF0351_12578
View Structure
Genome:
Enterococcus faecium DO
(
NC_017960.1
);
Phylum:
Firmicutes
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membrane protein";i:13;s:16:"HMPREF0351_11165";i:14;s:6:"Operon";i:15;s:7:"1107154";i:16;s:67:"HMPREF0351_11165;HMPREF0351_11166;HMPREF0351_11167;HMPREF0351_11168";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1183132-1183229";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1183245-1183926";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:16:"HMPREF0351_11199";i:14;s:6:"Operon";i:15;s:7:"1107160";i:16;s:44:"HMPREF0351_11199(xpt);HMPREF0351_11200(pbuX)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1449534-1449700";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1448245-1449409";i:10;s:1:"-";i:11;s:5:"ftsW3";i:12;s:44:"FtsW/RodA/SpoVE family cell division protein";i:13;s:16:"HMPREF0351_11459";i:14;s:11:"Single gene";i:15;s:7:"3824573";i:16;s:23:"HMPREF0351_11459(ftsW3)";i:17;s:51:"cell cycle [GO:0007049]; cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1597925-1598072";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1598115-1599921";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:16:"HMPREF0351_11624";i:14;s:11:"Single gene";i:15;s:7:"3824617";i:16;s:22:"HMPREF0351_11624(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1868284-1868350";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1866960-1868229";i:10;s:1:"-";i:11;s:16:"HMPREF0351_11906";i:12;s:49:"Chloride carrier/channel (ClC) family transporter";i:13;s:16:"HMPREF0351_11906";i:14;s:11:"Single gene";i:15;s:7:"3824719";i:16;s:16:"HMPREF0351_11906";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2007885-2007929";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2007952-2008927";i:10;s:1:"+";i:11;s:4:"rihB";i:12;s:20:"Purine nucleosidase ";i:13;s:16:"HMPREF0351_12060";i:14;s:6:"Operon";i:15;s:7:"1107354";i:16;s:39:"HMPREF0351_12060(rihB);HMPREF0351_12061";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2197017-2197115";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"2196442-2196988";i:10;s:1:"-";i:11;s:16:"HMPREF0351_12248";i:12;s:25:"Integral membrane protein";i:13;s:16:"HMPREF0351_12248";i:14;s:11:"Single gene";i:15;s:7:"3824828";i:16;s:16:"HMPREF0351_12248";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2341469-2341515";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2340952-2341456";i:10;s:1:"-";i:11;s:16:"HMPREF0351_12401";i:12;s:25:"Integral membrane protein";i:13;s:16:"HMPREF0351_12401";i:14;s:11:"Single gene";i:15;s:7:"3824881";i:16;s:16:"HMPREF0351_12401";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2509287-2509366";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"2506493-2508068";i:10;s:1:"-";i:11;s:16:"HMPREF0351_12539";i:12;s:69:"MFS family major facilitator transporter; drug resistance transporter";i:13;s:16:"HMPREF0351_12539";i:14;s:6:"Operon";i:15;s:7:"1107460";i:16;s:39:"HMPREF0351_12539;HMPREF0351_12540(metK)";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017960.1";i:2;s:24:"Enterococcus faecium DO ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2558499-2558601";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2557863-2558433";i:10;s:1:"-";i:11;s:16:"HMPREF0351_12578";i:12;s:30:"PTT family thiamin transporter";i:13;s:16:"HMPREF0351_12578";i:14;s:11:"Single gene";i:15;s:7:"3824930";i:16;s:16:"HMPREF0351_12578";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
