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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
531413-531594
(-)
FMN
530772-531291 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
TMO_0481
Operon
DOOR ID:
1105907
TMO_0480,
TMO_0481
(ribH)
View Structure
2
1112603-1112680
(-)
sam-alpha
1111676-1112465 (-)
TMO_1015
Lipoprotein; YaeC family
TMO_1015
Single gene
DOOR ID:
3822572
TMO_1015
View Structure
3
1506440-1506662
(-)
cobalamin
1504439-1506335 (-)
btuB
TonB-dependent receptor
TMO_1358
Operon
DOOR ID:
1106099
TMO_1355,
TMO_1356
(cobC)
,
TMO_1357
(cobQ)
,
TMO_1358
(btuB)
View Structure
4
1703862-1703938
(-)
SAH
1701652-1702708 (+)
TMO_1533
Extracellular solute-binding protein; family 1
TMO_1533
Single gene
DOOR ID:
3822758
TMO_1533
View Structure
5
2046448-2046664
(+)
cobalamin
2046798-2048769 (+)
btuB
TonB-dependent receptor
TMO_1857
Operon
DOOR ID:
1106209
TMO_1857
(btuB)
,
TMO_1858,
TMO_1859
(yvrB)
,
TMO_1860
(fecE)
,
TMO_1861
View Structure
6
2545916-2546129
(-)
cobalamin
2545010-2545817 (-)
TMO_2292
Methyltransferase type 11
TMO_2292
Operon
DOOR ID:
1106303
TMO_2288
(hmuV)
,
TMO_2289,
TMO_2290
(yvrC)
,
TMO_2291
(btuB)
,
TMO_2292
View Structure
7
2670721-2670941
(-)
cobalamin
2670112-2670595 (-)
TMO_2411
NrdA protein
TMO_2411
Operon
DOOR ID:
1106324
TMO_2409,
TMO_2410,
TMO_2411
View Structure
8
2732570-2732678
(+)
TPP
2733460-2734240 (+)
TMO_2472
ABC transporter permease protein
TMO_2472
Operon
DOOR ID:
1106340
TMO_2471,
TMO_2472,
TMO_2473
View Structure
9
3061265-3061498
(+)
cobalamin
3061645-3063613 (+)
btuB
Receptor
TMO_2761
Operon
DOOR ID:
1106402
TMO_2761
(btuB)
,
TMO_2762
(fdx4)
,
TMO_2763,
TMO_2764
(yjbI)
View Structure
10
3094782-3094907
(-)
glycine
3093552-3094692 (-)
gcvT
Glycine cleavage system T protein
TMO_2790
Operon
DOOR ID:
1106409
TMO_2787,
TMO_2788,
TMO_2789
(gcvH)
,
TMO_2790
(gcvT)
View Structure
11
3094908-3095036
(-)
glycine
3093552-3094692 (-)
gcvT
Glycine cleavage system T protein
TMO_2790
Operon
DOOR ID:
1106409
TMO_2787,
TMO_2788,
TMO_2789
(gcvH)
,
TMO_2790
(gcvT)
View Structure
12
3254084-3254322
(-)
cobalamin
3253304-3253979 (-)
cbiM
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
TMO_2938
Operon
DOOR ID:
1106440
TMO_2934,
TMO_2935,
TMO_2936,
TMO_2937
(cbiN)
,
TMO_2938
(cbiM)
View Structure
13
3501340-3501459
(-)
TPP
3500428-3501238 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
TMO_3178
Operon
DOOR ID:
1106496
TMO_3177
(thiE)
,
TMO_3178
(thiM)
View Structure
14
3668867-3668946
(-)
sam-alpha
3667529-3668810 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
TMO_3334
Single gene
DOOR ID:
3823356
TMO_3334
(metZ)
View Structure
15
3889878-3889954
(+)
sam-alpha
3890090-3891260 (+)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
TMO_3537
Single gene
DOOR ID:
3823414
TMO_3537
(metK)
View Structure
Genome:
Tistrella mobilis KA081020-065
(
NC_017956.1
);
Phylum:
Alphaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"531413-531594";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"530772-531291";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:8:"TMO_0481";i:14;s:6:"Operon";i:15;s:7:"1105907";i:16;s:23:"TMO_0480;TMO_0481(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1112603-1112680";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1111676-1112465";i:10;s:1:"-";i:11;s:8:"TMO_1015";i:12;s:24:"Lipoprotein; YaeC family";i:13;s:8:"TMO_1015";i:14;s:11:"Single gene";i:15;s:7:"3822572";i:16;s:8:"TMO_1015";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1506440-1506662";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1504439-1506335";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"TMO_1358";i:14;s:6:"Operon";i:15;s:7:"1106099";i:16;s:53:"TMO_1355;TMO_1356(cobC);TMO_1357(cobQ);TMO_1358(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1703862-1703938";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1701652-1702708";i:10;s:1:"+";i:11;s:8:"TMO_1533";i:12;s:46:"Extracellular solute-binding protein; family 1";i:13;s:8:"TMO_1533";i:14;s:11:"Single gene";i:15;s:7:"3822758";i:16;s:8:"TMO_1533";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2046448-2046664";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2046798-2048769";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"TMO_1857";i:14;s:6:"Operon";i:15;s:7:"1106209";i:16;s:62:"TMO_1857(btuB);TMO_1858;TMO_1859(yvrB);TMO_1860(fecE);TMO_1861";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2545916-2546129";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2545010-2545817";i:10;s:1:"-";i:11;s:8:"TMO_2292";i:12;s:25:"Methyltransferase type 11";i:13;s:8:"TMO_2292";i:14;s:6:"Operon";i:15;s:7:"1106303";i:16;s:62:"TMO_2288(hmuV);TMO_2289;TMO_2290(yvrC);TMO_2291(btuB);TMO_2292";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2670721-2670941";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2670112-2670595";i:10;s:1:"-";i:11;s:8:"TMO_2411";i:12;s:12:"NrdA protein";i:13;s:8:"TMO_2411";i:14;s:6:"Operon";i:15;s:7:"1106324";i:16;s:26:"TMO_2409;TMO_2410;TMO_2411";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2732570-2732678";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2733460-2734240";i:10;s:1:"+";i:11;s:8:"TMO_2472";i:12;s:32:"ABC transporter permease protein";i:13;s:8:"TMO_2472";i:14;s:6:"Operon";i:15;s:7:"1106340";i:16;s:26:"TMO_2471;TMO_2472;TMO_2473";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3061265-3061498";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3061645-3063613";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:8:"Receptor";i:13;s:8:"TMO_2761";i:14;s:6:"Operon";i:15;s:7:"1106402";i:16;s:53:"TMO_2761(btuB);TMO_2762(fdx4);TMO_2763;TMO_2764(yjbI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3094782-3094907";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3093552-3094692";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"TMO_2790";i:14;s:6:"Operon";i:15;s:7:"1106409";i:16;s:47:"TMO_2787;TMO_2788;TMO_2789(gcvH);TMO_2790(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3094908-3095036";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3093552-3094692";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"TMO_2790";i:14;s:6:"Operon";i:15;s:7:"1106409";i:16;s:47:"TMO_2787;TMO_2788;TMO_2789(gcvH);TMO_2790(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3254084-3254322";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3253304-3253979";i:10;s:1:"-";i:11;s:4:"cbiM";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:8:"TMO_2938";i:14;s:6:"Operon";i:15;s:7:"1106440";i:16;s:56:"TMO_2934;TMO_2935;TMO_2936;TMO_2937(cbiN);TMO_2938(cbiM)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3501340-3501459";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3500428-3501238";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"TMO_3178";i:14;s:6:"Operon";i:15;s:7:"1106496";i:16;s:29:"TMO_3177(thiE);TMO_3178(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3668867-3668946";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3667529-3668810";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"TMO_3334";i:14;s:11:"Single gene";i:15;s:7:"3823356";i:16;s:14:"TMO_3334(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017956.1";i:2;s:31:"Tistrella mobilis KA081020-065 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3889878-3889954";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3890090-3891260";i:10;s:1:"+";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"TMO_3537";i:14;s:11:"Single gene";i:15;s:7:"3823414";i:16;s:14:"TMO_3537(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}}