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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
98958-99060
(-)
TPP
96869-98216 (-)
MODMU_0087
HMP/thiamine import ATP-binding protein
MODMU_0087
Operon
DOOR ID:
1292213
MODMU_0087,
MODMU_0086
View Structure
2
437198-437282
(-)
c-di-GMP-II
436311-437178 (-)
MODMU_0424
Glycosyl transferase family 2
MODMU_0424
Single gene
DOOR ID:
3820518
MODMU_0424
View Structure
3
634838-634910
(-)
cobalamin
632711-634775 (-)
chlD
Cobaltochelatase subunit
MODMU_0626
Operon
DOOR ID:
1292312
MODMU_0626
(chlD)
,
MODMU_0625
(cobO)
,
MODMU_0624
(cobB)
,
MODMU_0623
(cbiM)
,
MODMU_0622
(cbiN)
,
MODMU_0621
(cbiQ)
,
MODMU_0620
(cbiO)
,
MODMU_0619,
MODMU_0618
(cobT)
,
MODMU_0617
(cysG)
View Structure
4
668121-668187
(+)
cobalamin
668238-671862 (+)
cobN
Aerobic cobaltochelatase subunit cobN
MODMU_0665
Operon
DOOR ID:
1292320
MODMU_0668,
MODMU_0667
(thiS)
,
MODMU_0666,
MODMU_0665
(cobN)
View Structure
5
778202-778329
(+)
SAM
778341-779643 (+)
thrC
L-threonine synthase
MODMU_0780
Single gene
DOOR ID:
3820642
MODMU_0780
(thrC)
View Structure
6
1568818-1568976
(+)
ydaO-yuaA
1569087-1570221 (+)
envC
Protease with a role in cell division
MODMU_1586
Single gene
DOOR ID:
3820915
MODMU_1586
(envC)
View Structure
7
1794517-1794676
(-)
ydaO-yuaA
1793592-1794219 (-)
MODMU_1826
Peptidoglycan-binding lysin domain protein
MODMU_1826
Single gene
DOOR ID:
3820994
MODMU_1826
View Structure
8
1824600-1824745
(+)
ydaO-yuaA
1825063-1825513 (+)
MODMU_1859
MODMU_1859
Operon
DOOR ID:
1292579
MODMU_1859,
MODMU_1860
View Structure
9
1906229-1906369
(+)
ydaO-yuaA
1906468-1907605 (+)
MODMU_1940
Peptidase M23
MODMU_1940
Single gene
DOOR ID:
3821038
MODMU_1940
View Structure
10
2067090-2067240
(+)
ydaO-yuaA
2067429-2068167 (+)
MODMU_2116
MODMU_2116
Single gene
DOOR ID:
3821097
MODMU_2116
View Structure
11
2097226-2097339
(+)
SAM-IV
2097373-2098735 (+)
MODMU_2148
Selenocysteine lyase
MODMU_2148
Single gene
DOOR ID:
3821106
MODMU_2148
View Structure
12
2108360-2108471
(-)
SAM-IV
2107630-2108161 (-)
MODMU_2158
GCN5-related N-acetyltransferase
MODMU_2158
Operon
DOOR ID:
1292646
MODMU_2154,
MODMU_2155,
MODMU_2156,
MODMU_2157,
MODMU_2158
View Structure
13
3517087-3517271
(-)
ydaO-yuaA
3515979-3517071 (-)
MODMU_3523
Putative Cell wall-associated hydrolase
MODMU_3523
Single gene
DOOR ID:
3821494
MODMU_3523
View Structure
14
3659600-3659761
(+)
ydaO-yuaA
3660395-3661391 (-)
sigW
RNA polymerase sigma factor sigW
MODMU_3662
Single gene
DOOR ID:
3821536
MODMU_3662
(sigW)
View Structure
15
3860117-3860273
(-)
ydaO-yuaA
3859063-3860110 (-)
MODMU_3891
Peptidoglycan-binding lysin domain protein (Modular protein)
MODMU_3891
Single gene
DOOR ID:
3821625
MODMU_3891
View Structure
16
4042354-4042493
(+)
ydaO-yuaA
4042517-4043015 (+)
MODMU_4070
MODMU_4070
Single gene
DOOR ID:
3821688
MODMU_4070
View Structure
17
5232273-5232446
(-)
ydaO-yuaA
5231110-5232256 (-)
MODMU_5247
Cell wall-associated hydrolase; invasion-associated protein
MODMU_5247
Single gene
DOOR ID:
3822000
MODMU_5247
View Structure
18
5309259-5309374
(+)
SAM-IV
5309419-5310712 (+)
metC
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
MODMU_5327
Operon
DOOR ID:
1293331
MODMU_5327
(metC)
,
MODMU_5328
(metX)
View Structure
19
5331259-5331340
(-)
ZMP-ZTP
5329807-5331241 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MODMU_5350
Operon
DOOR ID:
1293334
MODMU_5343,
MODMU_5344,
MODMU_5345,
MODMU_5346,
MODMU_5347,
MODMU_5348,
MODMU_5349,
MODMU_5350
(glyA)
View Structure
20
5396982-5397046
(+)
ykkC-III
5397383-5398463 (-)
MODMU_5424
MODMU_5424
operon
DOOR ID:
1293353
MODMU_5424,
MODMU_5425
View Structure
21
5530409-5530502
(+)
TPP
5531282-5531945 (+)
thiE
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
MODMU_5555
Operon
DOOR ID:
1293382
MODMU_5554
(thiM)
,
MODMU_5555
(thiE)
,
MODMU_5556
(thiD)
View Structure
Genome:
Modestobacter marinus
(
NC_017955.1
);
Phylum:
Actinobacteria
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"98958-99060";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"96869-98216";i:10;s:1:"-";i:11;s:10:"MODMU_0087";i:12;s:39:"HMP/thiamine import ATP-binding protein";i:13;s:10:"MODMU_0087";i:14;s:6:"Operon";i:15;s:7:"1292213";i:16;s:21:"MODMU_0087;MODMU_0086";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"437198-437282";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"436311-437178";i:10;s:1:"-";i:11;s:10:"MODMU_0424";i:12;s:29:"Glycosyl transferase family 2";i:13;s:10:"MODMU_0424";i:14;s:11:"Single gene";i:15;s:7:"3820518";i:16;s:10:"MODMU_0424";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"634838-634910";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"632711-634775";i:10;s:1:"-";i:11;s:4:"chlD";i:12;s:24:"Cobaltochelatase subunit";i:13;s:10:"MODMU_0626";i:14;s:6:"Operon";i:15;s:7:"1292312";i:16;s:163:"MODMU_0626(chlD);MODMU_0625(cobO);MODMU_0624(cobB);MODMU_0623(cbiM);MODMU_0622(cbiN);MODMU_0621(cbiQ);MODMU_0620(cbiO);MODMU_0619;MODMU_0618(cobT);MODMU_0617(cysG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"668121-668187";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"668238-671862";i:10;s:1:"+";i:11;s:4:"cobN";i:12;s:38:"Aerobic cobaltochelatase subunit cobN ";i:13;s:10:"MODMU_0665";i:14;s:6:"Operon";i:15;s:7:"1292320";i:16;s:55:"MODMU_0668;MODMU_0667(thiS);MODMU_0666;MODMU_0665(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"778202-778329";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"778341-779643";i:10;s:1:"+";i:11;s:4:"thrC";i:12;s:21:"L-threonine synthase ";i:13;s:10:"MODMU_0780";i:14;s:11:"Single gene";i:15;s:7:"3820642";i:16;s:16:"MODMU_0780(thrC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1568818-1568976";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1569087-1570221";i:10;s:1:"+";i:11;s:4:"envC";i:12;s:37:"Protease with a role in cell division";i:13;s:10:"MODMU_1586";i:14;s:11:"Single gene";i:15;s:7:"3820915";i:16;s:16:"MODMU_1586(envC)";i:17;s:26:"cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1794517-1794676";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1793592-1794219";i:10;s:1:"-";i:11;s:10:"MODMU_1826";i:12;s:42:"Peptidoglycan-binding lysin domain protein";i:13;s:10:"MODMU_1826";i:14;s:11:"Single gene";i:15;s:7:"3820994";i:16;s:10:"MODMU_1826";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1824600-1824745";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1825063-1825513";i:10;s:1:"+";i:11;s:10:"MODMU_1859";i:12;s:0:"";i:13;s:10:"MODMU_1859";i:14;s:6:"Operon";i:15;s:7:"1292579";i:16;s:21:"MODMU_1859;MODMU_1860";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1906229-1906369";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1906468-1907605";i:10;s:1:"+";i:11;s:10:"MODMU_1940";i:12;s:13:"Peptidase M23";i:13;s:10:"MODMU_1940";i:14;s:11:"Single gene";i:15;s:7:"3821038";i:16;s:10:"MODMU_1940";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2067090-2067240";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2067429-2068167";i:10;s:1:"+";i:11;s:10:"MODMU_2116";i:12;s:0:"";i:13;s:10:"MODMU_2116";i:14;s:11:"Single gene";i:15;s:7:"3821097";i:16;s:10:"MODMU_2116";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2097226-2097339";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2097373-2098735";i:10;s:1:"+";i:11;s:10:"MODMU_2148";i:12;s:20:"Selenocysteine lyase";i:13;s:10:"MODMU_2148";i:14;s:11:"Single gene";i:15;s:7:"3821106";i:16;s:10:"MODMU_2148";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2108360-2108471";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2107630-2108161";i:10;s:1:"-";i:11;s:10:"MODMU_2158";i:12;s:32:"GCN5-related N-acetyltransferase";i:13;s:10:"MODMU_2158";i:14;s:6:"Operon";i:15;s:7:"1292646";i:16;s:54:"MODMU_2154;MODMU_2155;MODMU_2156;MODMU_2157;MODMU_2158";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3517087-3517271";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3515979-3517071";i:10;s:1:"-";i:11;s:10:"MODMU_3523";i:12;s:39:"Putative Cell wall-associated hydrolase";i:13;s:10:"MODMU_3523";i:14;s:11:"Single gene";i:15;s:7:"3821494";i:16;s:10:"MODMU_3523";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3659600-3659761";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3660395-3661391";i:10;s:1:"-";i:11;s:4:"sigW";i:12;s:32:"RNA polymerase sigma factor sigW";i:13;s:10:"MODMU_3662";i:14;s:11:"Single gene";i:15;s:7:"3821536";i:16;s:16:"MODMU_3662(sigW)";i:17;s:52:"DNA-templated transcription; initiation [GO:0006352]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3860117-3860273";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3859063-3860110";i:10;s:1:"-";i:11;s:10:"MODMU_3891";i:12;s:60:"Peptidoglycan-binding lysin domain protein (Modular protein)";i:13;s:10:"MODMU_3891";i:14;s:11:"Single gene";i:15;s:7:"3821625";i:16;s:10:"MODMU_3891";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4042354-4042493";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4042517-4043015";i:10;s:1:"+";i:11;s:10:"MODMU_4070";i:12;s:0:"";i:13;s:10:"MODMU_4070";i:14;s:11:"Single gene";i:15;s:7:"3821688";i:16;s:10:"MODMU_4070";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5232273-5232446";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5231110-5232256";i:10;s:1:"-";i:11;s:10:"MODMU_5247";i:12;s:59:"Cell wall-associated hydrolase; invasion-associated protein";i:13;s:10:"MODMU_5247";i:14;s:11:"Single gene";i:15;s:7:"3822000";i:16;s:10:"MODMU_5247";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5309259-5309374";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5309419-5310712";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:10:"MODMU_5327";i:14;s:6:"Operon";i:15;s:7:"1293331";i:16;s:33:"MODMU_5327(metC);MODMU_5328(metX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5331259-5331340";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"5329807-5331241";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"MODMU_5350";i:14;s:6:"Operon";i:15;s:7:"1293334";i:16;s:93:"MODMU_5343;MODMU_5344;MODMU_5345;MODMU_5346;MODMU_5347;MODMU_5348;MODMU_5349;MODMU_5350(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5396982-5397046";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"5397383-5398463";i:10;s:1:"-";i:11;s:10:"MODMU_5424";i:12;s:0:"";i:13;s:10:"MODMU_5424";i:14;s:6:"operon";i:15;s:7:"1293353";i:16;s:21:"MODMU_5424;MODMU_5425";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_017955.1";i:2;s:21:"Modestobacter marinus";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5530409-5530502";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5531282-5531945";i:10;s:1:"+";i:11;s:4:"thiE";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"MODMU_5555";i:14;s:6:"Operon";i:15;s:7:"1293382";i:16;s:50:"MODMU_5554(thiM);MODMU_5555(thiE);MODMU_5556(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
