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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
162544-162676
(-)
glycine
161339-162458 (-)
MYA_0142
Aminomethyltransferase (0) (Glycine cleavage system T protein)
MYA_0142
Single gene
DOOR ID:
3806767
MYA_0142
View Structure
2
162709-162812
(-)
glycine
161339-162458 (-)
MYA_0142
Aminomethyltransferase (0) (Glycine cleavage system T protein)
MYA_0142
Single gene
DOOR ID:
3806767
MYA_0142
View Structure
3
219294-219409
(+)
SAH
219443-220862 (+)
MYA_0196
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
MYA_0196
Single gene
DOOR ID:
3806789
MYA_0196
View Structure
4
357892-358014
(+)
TPP
358248-359400 (+)
MYA_0329
Glycine oxidase ThiO
MYA_0329
Operon
DOOR ID:
1099051
MYA_0328,
MYA_0329,
MYA_0330,
MYA_0331
View Structure
5
742857-742957
(+)
ZMP-ZTP
743094-744342 (+)
MYA_0690
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MYA_0690
Operon
DOOR ID:
1099129
MYA_0690,
MYA_0691
View Structure
6
961933-962053
(-)
yybP-ykoY
961264-961837 (-)
MYA_0906
Putative transmembrane protein
MYA_0906
Single gene
DOOR ID:
3807040
MYA_0906
View Structure
7
1185076-1185192
(-)
TPP
1183019-1184951 (-)
MYA_1109
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MYA_1109
Single gene
DOOR ID:
3807122
MYA_1109
View Structure
8
1598465-1598698
(-)
cobalamin
1597550-1598300 (-)
MYA_1478
Uroporphyrinogen-III methyltransferase
MYA_1478
Operon
DOOR ID:
1099287
MYA_1475,
MYA_1476,
MYA_1477,
MYA_1478
View Structure
9
1598836-1599098
(+)
cobalamin
1599285-1600344 (+)
MYA_1480
Nickel/cobalt efflux system
MYA_1480
Operon
DOOR ID:
1099288
MYA_1480,
MYA_1481,
MYA_1482,
MYA_1483,
MYA_1484,
MYA_1485
View Structure
10
1612938-1613127
(-)
cobalamin
1610771-1611398 (-)
MYA_1489
Cobalt-precorrin-8x methylmutase
MYA_1489
Operon
DOOR ID:
1099289
MYA_1487,
MYA_1488,
MYA_1489
View Structure
11
2252205-2252288
(+)
SAH
2254408-2255026 (-)
MYA_2072
Putative transmembrane protein
MYA_2072
Single gene
DOOR ID:
3807522
MYA_2072
View Structure
12
2255595-2255639
(-)
mini-ykkC
2255251-2255572 (-)
MYA_2073
MYA_2073
Single gene
DOOR ID:
3807523
MYA_2073
View Structure
13
2420799-2421054
(-)
cobalamin
2419320-2420493 (-)
MYA_2226
Vitamin B12 ABC transporter; permease component BtuC
MYA_2226
Operon
DOOR ID:
1099442
MYA_2222,
MYA_2223,
MYA_2224,
MYA_2225,
MYA_2226
View Structure
14
2646050-2646198
(-)
FMN
2645220-2645931 (-)
MYA_2444
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
MYA_2444
Single gene
DOOR ID:
3807699
MYA_2444
View Structure
Genome:
Burkholderia sp. KJ006 chromosome I
(
NC_017920.1
);
Phylum:
Betaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"162544-162676";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"161339-162458";i:10;s:1:"-";i:11;s:8:"MYA_0142";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"MYA_0142";i:14;s:11:"Single gene";i:15;s:7:"3806767";i:16;s:8:"MYA_0142";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"162709-162812";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"161339-162458";i:10;s:1:"-";i:11;s:8:"MYA_0142";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"MYA_0142";i:14;s:11:"Single gene";i:15;s:7:"3806767";i:16;s:8:"MYA_0142";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"219294-219409";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"219443-220862";i:10;s:1:"+";i:11;s:8:"MYA_0196";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"MYA_0196";i:14;s:11:"Single gene";i:15;s:7:"3806789";i:16;s:8:"MYA_0196";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"357892-358014";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"358248-359400";i:10;s:1:"+";i:11;s:8:"MYA_0329";i:12;s:20:"Glycine oxidase ThiO";i:13;s:8:"MYA_0329";i:14;s:6:"Operon";i:15;s:7:"1099051";i:16;s:35:"MYA_0328;MYA_0329;MYA_0330;MYA_0331";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"742857-742957";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"743094-744342";i:10;s:1:"+";i:11;s:8:"MYA_0690";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"MYA_0690";i:14;s:6:"Operon";i:15;s:7:"1099129";i:16;s:17:"MYA_0690;MYA_0691";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"961933-962053";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"961264-961837";i:10;s:1:"-";i:11;s:8:"MYA_0906";i:12;s:30:"Putative transmembrane protein";i:13;s:8:"MYA_0906";i:14;s:11:"Single gene";i:15;s:7:"3807040";i:16;s:8:"MYA_0906";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1185076-1185192";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1183019-1184951";i:10;s:1:"-";i:11;s:8:"MYA_1109";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"MYA_1109";i:14;s:11:"Single gene";i:15;s:7:"3807122";i:16;s:8:"MYA_1109";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1598465-1598698";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1597550-1598300";i:10;s:1:"-";i:11;s:8:"MYA_1478";i:12;s:38:"Uroporphyrinogen-III methyltransferase";i:13;s:8:"MYA_1478";i:14;s:6:"Operon";i:15;s:7:"1099287";i:16;s:35:"MYA_1475;MYA_1476;MYA_1477;MYA_1478";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1598836-1599098";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1599285-1600344";i:10;s:1:"+";i:11;s:8:"MYA_1480";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:8:"MYA_1480";i:14;s:6:"Operon";i:15;s:7:"1099288";i:16;s:53:"MYA_1480;MYA_1481;MYA_1482;MYA_1483;MYA_1484;MYA_1485";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1612938-1613127";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1610771-1611398";i:10;s:1:"-";i:11;s:8:"MYA_1489";i:12;s:32:"Cobalt-precorrin-8x methylmutase";i:13;s:8:"MYA_1489";i:14;s:6:"Operon";i:15;s:7:"1099289";i:16;s:26:"MYA_1487;MYA_1488;MYA_1489";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2252205-2252288";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2254408-2255026";i:10;s:1:"-";i:11;s:8:"MYA_2072";i:12;s:30:"Putative transmembrane protein";i:13;s:8:"MYA_2072";i:14;s:11:"Single gene";i:15;s:7:"3807522";i:16;s:8:"MYA_2072";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2255595-2255639";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2255251-2255572";i:10;s:1:"-";i:11;s:8:"MYA_2073";i:12;s:0:"";i:13;s:8:"MYA_2073";i:14;s:11:"Single gene";i:15;s:7:"3807523";i:16;s:8:"MYA_2073";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2420799-2421054";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2419320-2420493";i:10;s:1:"-";i:11;s:8:"MYA_2226";i:12;s:52:"Vitamin B12 ABC transporter; permease component BtuC";i:13;s:8:"MYA_2226";i:14;s:6:"Operon";i:15;s:7:"1099442";i:16;s:44:"MYA_2222;MYA_2223;MYA_2224;MYA_2225;MYA_2226";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017920.1";i:2;s:35:"Burkholderia sp. KJ006 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2646050-2646198";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2645220-2645931";i:10;s:1:"-";i:11;s:8:"MYA_2444";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"MYA_2444";i:14;s:11:"Single gene";i:15;s:7:"3807699";i:16;s:8:"MYA_2444";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}