Genome: Bacillus amyloliquefaciens Y2 (NC_017912.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 204019-204190 (+)glmS204279-206082 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		MUS_0191Operon

DOOR ID: 1098154		MUS_0186,
MUS_0187,
MUS_0188 (ybbT),
MUS_0189,
MUS_0190,
MUS_0191 (glmS)		 View Structure
2 437045-437191 (+)ydaO-yuaA437323-439168 (+)MUS_0424

MUS_0424Single gene

DOOR ID: 3805100		MUS_0424 View Structure
3 523526-523629 (+)TPP523706-524171 (+)MUS_0530

MUS_0530Operon

DOOR ID: 1098219		MUS_0530,
MUS_0531 (thyA),
MUS_0532 (ubiE),
MUS_0533 (thiD),
MUS_0534,
MUS_0535,
MUS_0536 (acr3)		 View Structure
4 571465-571564 (-)purine570249-571410 (-)ydhL

MFS transporter; DHA1 family; chloramphenicol resistance protein		MUS_0589Single gene

DOOR ID: 3805184		MUS_0589 (ydhL) View Structure
5 637802-637903 (+)purine637983-639357 (+)pbuG

Hypoxanthine/guanine permease		MUS_0653Single gene

DOOR ID: 3805205		MUS_0653 (pbuG) View Structure
6 641599-641700 (+)purine641832-642321 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		MUS_0658Operon

DOOR ID: 1098242		MUS_0658 (purE),
MUS_0659 (purK),
MUS_0660 (purB),
MUS_0661 (purC),
MUS_0662 (purS),
MUS_0663 (purQ),
MUS_0664 (purL),
MUS_0665 (purF),
MUS_0666 (purM),
MUS_0667 (purN),
MUS_0668 (purH),
MUS_0669 (purD)		 View Structure
7 867654-867764 (+)TPP867885-869658 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		MUS_0903Single gene

DOOR ID: 3805308		MUS_0903 (thiC) View Structure
8 1073550-1073671 (-)SAM1071618-1073460 (-)yitJ

Homocysteine S-methyltransferase (0)		MUS_1139Single gene

DOOR ID: 3805419		MUS_1139 (yitJ) View Structure
9 1134305-1134413 (+)TPP1134497-1135208 (+)tenA

Aminopyrimidine aminohydrolase 		MUS_1210Operon

DOOR ID: 1098341		MUS_1210 (tenA),
MUS_1211 (tenI),
MUS_1212 (goxB),
MUS_1213 (thiS),
MUS_1214 (thiG),
MUS_1215 (thiF),
MUS_1216 (yjbV)		 View Structure
10 1152923-1153048 (+)SAM1153117-1154239 (+)yjcI

Cystathionine gamma-synthase (8)		MUS_1237Operon

DOOR ID: 1098345		MUS_1237 (yjcI),
MUS_1238 (yjcJ)		 View Structure
11 1276503-1276611 (+)ykkC-yxkD1276692-1277016 (+)ykkC

Small multidrug resistance protein; SMR family		MUS_1382Operon

DOOR ID: 1098373		MUS_1382 (ykkC),
MUS_1383 (ykkD)		 View Structure
12 1291015-1291169 (-)SAM1287921-1288593 (+)yeiL

DNA-binding transcriptional activator		MUS_1399Single gene

DOOR ID: 3805518		MUS_1399 (yeiL) View Structure
13 1296506-1296619 (-)TPP1295726-1296326 (-)ykoE

Putative HMP/thiamine permease protein		MUS_1406Operon

DOOR ID: 1098377		MUS_1404 (ykoC),
MUS_1405 (ykoD),
MUS_1406 (ykoE)		 View Structure
14 1298363-1298528 (+)ykoK1298762-1300118 (+)ykoK

Magnesium transporter MgtE		MUS_1410Single gene

DOOR ID: 3805524		MUS_1410 (ykoK) View Structure
15 1306450-1306550 (+)yybP-ykoY1306617-1307430 (+)yceF1

Putative membrane protein		MUS_1422Single gene

DOOR ID: 3805534		MUS_1422 (yceF1) View Structure
16 1320798-1320952 (-)SAM1319503-1320688 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		MUS_1437Operon

DOOR ID: 1098382		MUS_1436 (mtnA),
MUS_1437 (mtnK)		 View Structure
17 1323150-1323249 (+)SAM1323330-1324545 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		MUS_1440Operon

DOOR ID: 1098383		MUS_1440 (mtnW),
MUS_1441 (mtnX),
MUS_1442 (mtnB),
MUS_1443 (mtnD)		 View Structure
18 1335941-1335985 (+)PreQ11336058-1336742 (+)ykvJ

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		MUS_1457Operon

DOOR ID: 1098387		MUS_1455,
MUS_1456,
MUS_1457 (ykvJ),
MUS_1458 (ykvK),
MUS_1459 (ykvL)		 View Structure
19 1585218-1585322 (+)TPP1585396-1586677 (+)ylmB

Acetylornithine deacetylase (6)		MUS_1682Operon

DOOR ID: 1098425		MUS_1682 (ylmB),
MUS_1683		 View Structure
20 1607882-1607986 (+)SAM1608083-1608815 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		MUS_1707Operon

DOOR ID: 1098430		MUS_1698 (pyrB),
MUS_1699 (pyrC),
MUS_1700 (pyrAA),
MUS_1701 (pyrAB),
MUS_1702 (pyrK),
MUS_1703 (pyrD),
MUS_1704 (pyrF),
MUS_1705 (pyrE),
MUS_1706,
MUS_1707 (cysH),
MUS_1708 (cysP),
MUS_1709 (sat),
MUS_1710 (cysC)		 View Structure
21 2210189-2210281 (-)SAM2209050-2210067 (-)yoaD

Phosphoglycerate dehydrogenase (5)		MUS_2236Operon

DOOR ID: 1098529		MUS_2234 (yoaB),
MUS_2235 (xylB1),
MUS_2236 (yoaD)		 View Structure
22 2366487-2366586 (-)purine2365802-2366387 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		MUS_2457Operon

DOOR ID: 1098577		MUS_2456 (pbuX1),
MUS_2457 (xpt)		 View Structure
23 2451859-2451993 (-)FMN2451138-2451711 (-)MUS_2556

Riboflavin transporter		MUS_2556Operon

DOOR ID: 1098598		MUS_2556,
MUS_2557		 View Structure
24 2471834-2471980 (-)FMN2470586-2471702 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		MUS_2579Operon

DOOR ID: 1098603		MUS_2576 (ribH),
MUS_2577 (ribA),
MUS_2578 (ribE),
MUS_2579 (ribD)		 View Structure
25 2658546-2658646 (-)glycine2657266-2658370 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		MUS_2754Operon

DOOR ID: 1098634		MUS_2752 (gcvPB),
MUS_2753 (gcvPA),
MUS_2754 (gcvT)		 View Structure
26 2964054-2964233 (-)lysine2962698-2964021 (-)lysC

Aspartokinase 		MUS_3120Single gene

DOOR ID: 3806068		MUS_3120 (lysC) View Structure
27 3172486-3172625 (-)SAM3171112-3172315 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		MUS_3341Single gene

DOOR ID: 3806158		MUS_3341 (metK) View Structure
28 3205688-3205788 (+)TPP3205888-3206470 (+)MUS_3378

MUS_3378Single gene

DOOR ID: 3806172		MUS_3378 View Structure
29 3385478-3385584 (-)SAM3384346-3385381 (-)yusC

Methionine import ATP-binding protein MetN 		MUS_3578Operon

DOOR ID: 1098797		MUS_3575 (yusA),
MUS_3576 (yusB),
MUS_3578 (yusC)		 View Structure
30 3440402-3440582 (-)lysine3438877-3440290 (-)yvsH

Basic amino acid/polyamine antiporter; APA family		MUS_3642Single gene

DOOR ID: 3806281		MUS_3642 (yvsH) View Structure
31 4019067-4019168 (-)ykkC-yxkD4018164-4019001 (-)MUS_4285

MUS_4285Operon

DOOR ID: 1098936		MUS_4285,
MUS_4286		 View Structure
32 4023967-4024053 (+)SAM4025300-4026101 (-)yxjB

rRNA (Guanine-N1-)-methyltransferase		MUS_4296Single gene

DOOR ID: 3806510		MUS_4296 (yxjB) View Structure
33 4026546-4026646 (+)purine4026664-4027975 (+)yxjA

Nucleoside permease		MUS_4298Single gene

DOOR ID: 3806511		MUS_4298 (yxjA) View Structure
34 4128874-4128954 (-)glycine4127381-4128686 (-)ydgF

Amino acid transporter; AAT family		MUS_4391Single gene

DOOR ID: 3806548		MUS_4391 (ydgF) View Structure