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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
555459-555564
(+)
TPP
555713-557603 (+)
thiC
PflA506_0479
Single gene
DOOR ID:
3802832
PflA506_0479
(thiC)
View Structure
2
1019748-1019867
(-)
yybP-ykoY
1019074-1019659 (-)
PflA506_0900
PflA506_0900
Single gene
DOOR ID:
3802992
PflA506_0900
View Structure
3
2091576-2091627
(-)
mini-ykkC
2091238-2091553 (-)
sugE
PflA506_1912
Single gene
DOOR ID:
3803412
PflA506_1912
(sugE)
View Structure
4
2709478-2709690
(-)
cobalamin
2709193-2709382 (-)
cbtB
PflA506_2477
Operon
DOOR ID:
1291629
PflA506_2475,
PflA506_2476
(cbtA)
,
PflA506_2477
(cbtB)
View Structure
5
2711314-2711514
(+)
cobalamin
2711606-2712668 (+)
cobW
PflA506_2481
Operon
DOOR ID:
1291630
PflA506_2481
(cobW)
,
PflA506_2482
(cobN)
View Structure
6
3933327-3933520
(+)
cobalamin
3933634-3934645 (+)
PflA506_3532
PflA506_3532
Operon
DOOR ID:
1291828
PflA506_3532,
PflA506_3533,
PflA506_3534
View Structure
7
4210141-4210388
(-)
cobalamin
4209450-4210062 (-)
cobO
PflA506_3796
Operon
DOOR ID:
1291879
PflA506_3791
(cobQ)
,
PflA506_3792,
PflA506_3793
(cobD)
,
PflA506_3794
(bluB)
,
PflA506_3795
(cobB)
,
PflA506_3796
(cobO)
View Structure
8
4490092-4490261
(+)
FMN
4490357-4490867 (+)
ribH
PflA506_4064
Single gene
DOOR ID:
3804300
PflA506_4064
(ribH)
View Structure
9
5511506-5511612
(+)
SAH
5511633-5513043 (+)
ahcY
PflA506_5019
Single gene
DOOR ID:
3804687
PflA506_5019
(ahcY)
View Structure
Genome:
Pseudomonas fluorescens A506
(
NC_017911.1
);
Phylum:
Gammaproteobacteria
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