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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
564778-564929
(+)
FMN
565032-565686 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EBL_c05470
Single gene
DOOR ID:
3801229
EBL_c05470
(ribB)
View Structure
2
792867-792938
(-)
fluoride
791463-792780 (-)
EBL_c07830
Putative chloride channel protein
EBL_c07830
Single gene
DOOR ID:
3801302
EBL_c07830
View Structure
3
1488155-1488251
(+)
TPP
1488287-1489076 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EBL_c14280
Operon
DOOR ID:
1097567
EBL_c14280
(thiM)
,
EBL_c14290
(thiD)
View Structure
4
1545999-1546182
(+)
cobalamin
1546282-1547665 (+)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
EBL_c14760
Operon
DOOR ID:
1097573
EBL_c14760
(cbiA)
,
EBL_c14770
(cbiB)
,
EBL_c14780
(cbiC)
,
EBL_c14790
(cbiD)
,
EBL_c14800
(cbiE)
,
EBL_c14810
(cbiT)
,
EBL_c14820
(cbiF)
,
EBL_c14830
(cbiG)
,
EBL_c14840
(cbiH)
,
EBL_c14850
(cbiJ)
,
EBL_c14860
(cbiK)
,
EBL_c14870
(cbiL)
,
EBL_c14880
(cbiM)
,
EBL_c14890
(cbiN)
,
EBL_c14900
(cbiQ)
,
EBL_c14910
(cbiO)
,
EBL_c14920
(cbiP)
,
EBL_c14930
(cobU)
,
EBL_c14940
(cobS)
View Structure
5
1802705-1802807
(-)
TPP
1801953-1802646 (-)
EBL_c17320
Transcriptional activator
EBL_c17320
Operon
DOOR ID:
1097617
EBL_c17290,
EBL_c17300,
EBL_c17310,
EBL_c17320
View Structure
6
1826945-1827117
(-)
yybP-ykoY
1825555-1826371 (+)
EBL_c17530
EBL_c17530
Single gene
DOOR ID:
3801695
EBL_c17530
View Structure
7
2699979-2700115
(-)
MOCO
2698434-2698920 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
EBL_c26130
Operon
DOOR ID:
1097776
EBL_c26110
(moaE)
,
EBL_c26120
(moaD)
,
EBL_c26130
(moaC)
,
EBL_c26140
(moaA)
View Structure
8
3717184-3717230
(-)
mini-ykkC
3716845-3717163 (-)
sugE
EBL_c35940
Single gene
DOOR ID:
3802388
EBL_c35940
(sugE)
View Structure
9
3808557-3808790
(+)
lysine
3808897-3810262 (+)
lysC
Aspartokinase
EBL_c36840
Single gene
DOOR ID:
3802440
EBL_c36840
(lysC)
View Structure
10
3842524-3842645
(+)
TPP
3842753-3844655 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EBL_c37130
Operon
DOOR ID:
1097987
EBL_c37130
(thiC)
,
EBL_c37140
(thiE)
,
EBL_c37150
(thiF)
,
EBL_c37160
(thiS)
,
EBL_c37170
(thiG)
,
EBL_c37180
(thiH)
View Structure
11
3963134-3963318
(-)
cobalamin
3961197-3963069 (-)
butB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EBL_c38270
Operon
DOOR ID:
1098006
EBL_c38260
(murI)
,
EBL_c38270
(butB)
View Structure
Genome:
Escherichia blattae DSM 4481
(
NC_017910.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"564778-564929";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"565032-565686";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"EBL_c05470";i:14;s:11:"Single gene";i:15;s:7:"3801229";i:16;s:16:"EBL_c05470(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"792867-792938";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"791463-792780";i:10;s:1:"-";i:11;s:10:"EBL_c07830";i:12;s:33:"Putative chloride channel protein";i:13;s:10:"EBL_c07830";i:14;s:11:"Single gene";i:15;s:7:"3801302";i:16;s:10:"EBL_c07830";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1488155-1488251";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1488287-1489076";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"EBL_c14280";i:14;s:6:"Operon";i:15;s:7:"1097567";i:16;s:33:"EBL_c14280(thiM);EBL_c14290(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1545999-1546182";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1546282-1547665";i:10;s:1:"+";i:11;s:4:"cbiA";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"EBL_c14760";i:14;s:6:"Operon";i:15;s:7:"1097573";i:16;s:322:"EBL_c14760(cbiA);EBL_c14770(cbiB);EBL_c14780(cbiC);EBL_c14790(cbiD);EBL_c14800(cbiE);EBL_c14810(cbiT);EBL_c14820(cbiF);EBL_c14830(cbiG);EBL_c14840(cbiH);EBL_c14850(cbiJ);EBL_c14860(cbiK);EBL_c14870(cbiL);EBL_c14880(cbiM);EBL_c14890(cbiN);EBL_c14900(cbiQ);EBL_c14910(cbiO);EBL_c14920(cbiP);EBL_c14930(cobU);EBL_c14940(cobS)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1802705-1802807";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1801953-1802646";i:10;s:1:"-";i:11;s:10:"EBL_c17320";i:12;s:25:"Transcriptional activator";i:13;s:10:"EBL_c17320";i:14;s:6:"Operon";i:15;s:7:"1097617";i:16;s:43:"EBL_c17290;EBL_c17300;EBL_c17310;EBL_c17320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1826945-1827117";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1825555-1826371";i:10;s:1:"+";i:11;s:10:"EBL_c17530";i:12;s:0:"";i:13;s:10:"EBL_c17530";i:14;s:11:"Single gene";i:15;s:7:"3801695";i:16;s:10:"EBL_c17530";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2699979-2700115";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2698434-2698920";i:10;s:1:"-";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:10:"EBL_c26130";i:14;s:6:"Operon";i:15;s:7:"1097776";i:16;s:67:"EBL_c26110(moaE);EBL_c26120(moaD);EBL_c26130(moaC);EBL_c26140(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3717184-3717230";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3716845-3717163";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"EBL_c35940";i:14;s:11:"Single gene";i:15;s:7:"3802388";i:16;s:16:"EBL_c35940(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3808557-3808790";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3808897-3810262";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:10:"EBL_c36840";i:14;s:11:"Single gene";i:15;s:7:"3802440";i:16;s:16:"EBL_c36840(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3842524-3842645";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3842753-3844655";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EBL_c37130";i:14;s:6:"Operon";i:15;s:7:"1097987";i:16;s:101:"EBL_c37130(thiC);EBL_c37140(thiE);EBL_c37150(thiF);EBL_c37160(thiS);EBL_c37170(thiG);EBL_c37180(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017910.1";i:2;s:29:"Escherichia blattae DSM 4481 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3963134-3963318";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3961197-3963069";i:10;s:1:"-";i:11;s:4:"butB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"EBL_c38270";i:14;s:6:"Operon";i:15;s:7:"1098006";i:16;s:33:"EBL_c38260(murI);EBL_c38270(butB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}