About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
140681-140785
(-)
TPP
138760-140569 (-)
Q7C_139
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Q7C_139
Operon
DOOR ID:
1092887
Q7C_135,
Q7C_136,
Q7C_137,
Q7C_138,
Q7C_139
View Structure
2
1001996-1002101
(+)
TPP
1002164-1004231 (+)
Q7C_971
TonB-dependent receptor
Q7C_971
Operon
DOOR ID:
1093063
Q7C_971,
Q7C_972,
Q7C_973,
Q7C_974
View Structure
3
1698392-1698470
(+)
SAH
1698562-1699726 (+)
Q7C_1692
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Q7C_1692
Operon
DOOR ID:
1093216
Q7C_1692,
Q7C_1693,
Q7C_1694
View Structure
4
2463843-2464044
(-)
cobalamin
2461794-2463735 (-)
Q7C_2476
TonB-dependent receptor; putative
Q7C_2476
Operon
DOOR ID:
1093373
Q7C_2474,
Q7C_2475,
Q7C_2476
View Structure
Genome:
Methylophaga sp. JAM7
(
NC_017856.1
);
Phylum:
Gammaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017856.1";i:2;s:22:"Methylophaga sp. JAM7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"140681-140785";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"138760-140569";i:10;s:1:"-";i:11;s:7:"Q7C_139";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"Q7C_139";i:14;s:6:"Operon";i:15;s:7:"1092887";i:16;s:39:"Q7C_135;Q7C_136;Q7C_137;Q7C_138;Q7C_139";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017856.1";i:2;s:22:"Methylophaga sp. JAM7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1001996-1002101";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1002164-1004231";i:10;s:1:"+";i:11;s:7:"Q7C_971";i:12;s:23:"TonB-dependent receptor";i:13;s:7:"Q7C_971";i:14;s:6:"Operon";i:15;s:7:"1093063";i:16;s:31:"Q7C_971;Q7C_972;Q7C_973;Q7C_974";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017856.1";i:2;s:22:"Methylophaga sp. JAM7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1698392-1698470";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1698562-1699726";i:10;s:1:"+";i:11;s:8:"Q7C_1692";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"Q7C_1692";i:14;s:6:"Operon";i:15;s:7:"1093216";i:16;s:26:"Q7C_1692;Q7C_1693;Q7C_1694";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017856.1";i:2;s:22:"Methylophaga sp. JAM7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2463843-2464044";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2461794-2463735";i:10;s:1:"-";i:11;s:8:"Q7C_2476";i:12;s:33:"TonB-dependent receptor; putative";i:13;s:8:"Q7C_2476";i:14;s:6:"Operon";i:15;s:7:"1093373";i:16;s:26:"Q7C_2474;Q7C_2475;Q7C_2476";i:17;s:0:"";i:18;s:15:"View Structure ";}}