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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1912256-1912336
(+)
SAH
1914385-1914670 (+)
SHJG_1597
SHJG_1597
Single gene
DOOR ID:
3777102
SHJG_1597
View Structure
2
3185861-3186091
(+)
ydaO-yuaA
3186094-3186568 (+)
SHJG_2674
NLP/P60 family protein (Secreted protein)
SHJG_2674
Single gene
DOOR ID:
3777670
SHJG_2674
View Structure
3
3307338-3307432
(-)
glycine
3304277-3307163 (-)
SHJG_2796
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SHJG_2796
Single gene
DOOR ID:
3777749
SHJG_2796
View Structure
4
3411946-3412076
(-)
FMN
3411177-3411783 (-)
SHJG_2879
Riboflavin synthase subunit alpha
SHJG_2879
Operon
DOOR ID:
1287334
SHJG_2873,
SHJG_2874,
SHJG_2875,
SHJG_2876,
SHJG_2877,
SHJG_2878,
SHJG_2879
View Structure
5
3860342-3860485
(+)
cobalamin
3860585-3861530 (+)
SHJG_3305
Cobalamin biosynthesis protein CobD
SHJG_3305
Operon
DOOR ID:
1287424
SHJG_3305,
SHJG_3306,
SHJG_3307,
SHJG_3308,
SHJG_3309,
SHJG_3310,
SHJG_3311
View Structure
6
4174044-4174155
(+)
TPP
4175345-4175558 (+)
SHJG_3592
Sulfur transfer protein involved in thiamine biosynthesis
SHJG_3592
Operon
DOOR ID:
1287477
SHJG_3591,
SHJG_3592,
SHJG_3593
View Structure
7
4211594-4211711
(-)
SAM-IV
4210099-4211461 (-)
SHJG_3626
Aminotransferase
SHJG_3626
Operon
DOOR ID:
1287485
SHJG_3625,
SHJG_3626
View Structure
8
4406960-4407135
(-)
TPP
4406262-4406880 (+)
SHJG_3811
TetR-family transcriptional regulator
SHJG_3811
Single gene
DOOR ID:
3778210
SHJG_3811
View Structure
9
5029360-5029431
(+)
ykkC-III
5029467-5029788 (+)
SHJG_4372
SHJG_4372
single gene
DOOR ID:
3778498
SHJG_4372
View Structure
10
5261949-5262121
(-)
ydaO-yuaA
5261212-5261944 (-)
SHJG_4567
Secreted protein
SHJG_4567
Single gene
DOOR ID:
3778610
SHJG_4567
View Structure
11
5552805-5552944
(-)
SAM
5551503-5552787 (-)
SHJG_4825
Threonine synthase
SHJG_4825
Operon
DOOR ID:
1287686
SHJG_4824,
SHJG_4825
View Structure
12
5710256-5710421
(-)
ydaO-yuaA
5709206-5710244 (-)
SHJG_4972
Peptidase
SHJG_4972
Single gene
DOOR ID:
3778872
SHJG_4972
View Structure
13
5893667-5893844
(-)
TPP
5891210-5891369 (-)
SHJG_5141
SHJG_5141
Single gene
DOOR ID:
3778962
SHJG_5141
View Structure
14
5988606-5988721
(+)
SAM-IV
5988987-5989311 (-)
SHJG_5226
SHJG_5226
Single gene
DOOR ID:
3779013
SHJG_5226
View Structure
15
6068489-6068671
(-)
cobalamin
6066400-6067363 (+)
SHJG_5296
Nucleoside hydrolase
SHJG_5296
Operon
DOOR ID:
1287762
SHJG_5295,
SHJG_5296
View Structure
16
6533966-6534147
(-)
ydaO-yuaA
6533468-6533960 (-)
SHJG_5723
SHJG_5723
Single gene
DOOR ID:
3779260
SHJG_5723
View Structure
17
6711234-6711326
(-)
ydaO-yuaA
6709647-6710580 (-)
SHJG_5897
NLP/P60 family secreted protein
SHJG_5897
Operon
DOOR ID:
1287875
SHJG_5897,
SHJG_5898
View Structure
18
6806693-6806781
(+)
ZMP-ZTP
6806815-6808270 (+)
SHJG_5966
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
SHJG_5966
Single gene
DOOR ID:
3779353
SHJG_5966
View Structure
19
7215917-7216054
(-)
cobalamin
7213433-7215794 (-)
SHJG_6341
Ribonucleoside-diphosphate reductase
SHJG_6341
Operon
DOOR ID:
1287954
SHJG_6340,
SHJG_6341
View Structure
20
7469187-7469282
(-)
glycine
7467912-7469031 (-)
SHJG_6561
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SHJG_6561
Single gene
DOOR ID:
3779655
SHJG_6561
View Structure
21
7658389-7658495
(+)
TPP
7658576-7659650 (+)
SHJG_6735
ABC transporter substrate-binding protein
SHJG_6735
Operon
DOOR ID:
1288040
SHJG_6735,
SHJG_6736,
SHJG_6737
View Structure
22
7912219-7912379
(+)
ydaO-yuaA
7912391-7913147 (+)
SHJG_6943
Peptidase
SHJG_6943
Single gene
DOOR ID:
3779839
SHJG_6943
View Structure
23
8805865-8805975
(+)
SAM-IV
8806328-8807312 (+)
SHJG_7745
ABC transporter permease protein
SHJG_7745
Operon
DOOR ID:
1288235
SHJG_7745,
SHJG_7746
View Structure
24
9356087-9356167
(-)
ZMP-ZTP
9355211-9356060 (-)
SHJG_8157
Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]
SHJG_8157
Single gene
DOOR ID:
3780391
SHJG_8157
View Structure
25
9637066-9637145
(+)
cobalamin
9637342-9638329 (+)
SHJG_8416
FecCD-family membrane transport protein
SHJG_8416
Operon
DOOR ID:
1288359
SHJG_8416,
SHJG_8417,
SHJG_8418
View Structure
Genome:
Streptomyces hygroscopicus subsp. jinggangensis 5008
(
NC_017765.1
);
Phylum:
Actinobacteria
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