About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
385794-385968
(+)
lysine
386058-387582 (+)
NT08PM_0387
NT08PM_0387
Single gene
DOOR ID:
3775540
NT08PM_0387
View Structure
2
697773-697922
(+)
MOCO
698983-699460 (+)
NT08PM_0674
NT08PM_0674
Operon
DOOR ID:
1376142
NT08PM_0676,
NT08PM_0675,
NT08PM_0674,
NT08PM_0673
View Structure
3
813256-813392
(+)
MOCO
813412-815899 (+)
NT08PM_0768
NT08PM_0768
Single gene
DOOR ID:
3775673
NT08PM_0768
View Structure
4
990975-991067
(-)
TPP
989932-990937 (-)
NT08PM_0940
NT08PM_0940
Operon
DOOR ID:
1376202
NT08PM_0937,
NT08PM_0938,
NT08PM_0939,
NT08PM_0940
View Structure
5
1221748-1221813
(+)
PreQ1
1221816-1222503 (+)
NT08PM_1146
NT08PM_1146
Operon
DOOR ID:
1376252
NT08PM_1146,
NT08PM_1147,
NT08PM_1148
View Structure
6
1315443-1315564
(-)
glycine
1313953-1315327 (-)
NT08PM_1249
NT08PM_1249
Single gene
DOOR ID:
3775817
NT08PM_1249
View Structure
7
1783346-1783501
(-)
FMN
1782584-1783229 (-)
NT08PM_1698
NT08PM_1698
Single gene
DOOR ID:
3775929
NT08PM_1698
View Structure
8
2276863-2276966
(+)
TPP
2277046-2277775 (+)
NT08PM_2199
NT08PM_2199
Operon
DOOR ID:
1376460
NT08PM_2199,
NT08PM_2200,
NT08PM_2201,
NT08PM_2202
View Structure
Genome:
Pasteurella multocida subsp. multocida str. 3480
(
NC_017764.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"385794-385968";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"386058-387582";i:10;s:1:"+";i:11;s:11:"NT08PM_0387";i:12;s:0:"";i:13;s:11:"NT08PM_0387";i:14;s:11:"Single gene";i:15;s:7:"3775540";i:16;s:11:"NT08PM_0387";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"697773-697922";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"698983-699460";i:10;s:1:"+";i:11;s:11:"NT08PM_0674";i:12;s:0:"";i:13;s:11:"NT08PM_0674";i:14;s:6:"Operon";i:15;s:7:"1376142";i:16;s:47:"NT08PM_0676;NT08PM_0675;NT08PM_0674;NT08PM_0673";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"813256-813392";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"813412-815899";i:10;s:1:"+";i:11;s:11:"NT08PM_0768";i:12;s:0:"";i:13;s:11:"NT08PM_0768";i:14;s:11:"Single gene";i:15;s:7:"3775673";i:16;s:11:"NT08PM_0768";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"990975-991067";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"989932-990937";i:10;s:1:"-";i:11;s:11:"NT08PM_0940";i:12;s:0:"";i:13;s:11:"NT08PM_0940";i:14;s:6:"Operon";i:15;s:7:"1376202";i:16;s:47:"NT08PM_0937;NT08PM_0938;NT08PM_0939;NT08PM_0940";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1221748-1221813";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1221816-1222503";i:10;s:1:"+";i:11;s:11:"NT08PM_1146";i:12;s:0:"";i:13;s:11:"NT08PM_1146";i:14;s:6:"Operon";i:15;s:7:"1376252";i:16;s:35:"NT08PM_1146;NT08PM_1147;NT08PM_1148";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1315443-1315564";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1313953-1315327";i:10;s:1:"-";i:11;s:11:"NT08PM_1249";i:12;s:0:"";i:13;s:11:"NT08PM_1249";i:14;s:11:"Single gene";i:15;s:7:"3775817";i:16;s:11:"NT08PM_1249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1783346-1783501";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1782584-1783229";i:10;s:1:"-";i:11;s:11:"NT08PM_1698";i:12;s:0:"";i:13;s:11:"NT08PM_1698";i:14;s:11:"Single gene";i:15;s:7:"3775929";i:16;s:11:"NT08PM_1698";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017764.1";i:2;s:49:"Pasteurella multocida subsp. multocida str. 3480 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2276863-2276966";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2277046-2277775";i:10;s:1:"+";i:11;s:11:"NT08PM_2199";i:12;s:0:"";i:13;s:11:"NT08PM_2199";i:14;s:6:"Operon";i:15;s:7:"1376460";i:16;s:47:"NT08PM_2199;NT08PM_2200;NT08PM_2201;NT08PM_2202";i:17;s:0:"";i:18;s:15:"View Structure ";}}
