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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16114-17083 (+)
SAEMRSA15_00120
SAEMRSA15_00120
Single gene
DOOR ID:
3774289
SAEMRSA15_00120
View Structure
2
404496-404598
(+)
purine
404828-405407 (+)
xpt
SAEMRSA15_03400
Operon
DOOR ID:
1375556
SAEMRSA15_03430
(guaA)
,
SAEMRSA15_03420
(guaB)
,
SAEMRSA15_03410
(pbuX)
,
SAEMRSA15_03400
(xpt)
View Structure
3
734036-734082
(-)
PreQ1
733197-733866 (-)
SAEMRSA15_06380
SAEMRSA15_06380
Operon
DOOR ID:
1375621
SAEMRSA15_06380,
SAEMRSA15_06370,
SAEMRSA15_06360
View Structure
4
842684-842787
(+)
SAM
842876-843902 (+)
SAEMRSA15_07400
SAEMRSA15_07400
Operon
DOOR ID:
1375640
SAEMRSA15_07400,
SAEMRSA15_07410,
SAEMRSA15_07420
View Structure
5
884371-884461
(+)
preQ1-II
885467-885845 (+)
SAEMRSA15_07850
SAEMRSA15_07850
Single gene
DOOR ID:
3774611
SAEMRSA15_07850
View Structure
6
963396-963502
(+)
yybP-ykoY
963577-964381 (+)
SAEMRSA15_08510
SAEMRSA15_08510
Single gene
DOOR ID:
3774636
SAEMRSA15_08510
View Structure
7
1025264-1025364
(-)
TPP
1024611-1025187 (-)
SAEMRSA15_09080
SAEMRSA15_09080
Operon
DOOR ID:
1375673
SAEMRSA15_09060,
SAEMRSA15_09070,
SAEMRSA15_09080
View Structure
8
1391626-1391801
(+)
lysine
1391882-1393088 (+)
lysC
SAEMRSA15_12560
Operon
DOOR ID:
1375740
SAEMRSA15_12560
(lysC)
,
SAEMRSA15_12570
(asd)
,
SAEMRSA15_12580
(dapA)
,
SAEMRSA15_12590
(dapB)
,
SAEMRSA15_12600
(dapD)
View Structure
9
1516090-1516224
(-)
FMN
1515482-1516034 (-)
SAEMRSA15_13440
SAEMRSA15_13440
Single gene
DOOR ID:
3774815
SAEMRSA15_13440
View Structure
10
1615929-1616026
(-)
glycine
1614762-1615854 (-)
gcvT
SAEMRSA15_14570
Operon
DOOR ID:
1375785
SAEMRSA15_14550,
SAEMRSA15_14560,
SAEMRSA15_14570
(gcvT)
View Structure
11
1745682-1745857
(-)
lysine
1744043-1745537 (-)
lysP
SAEMRSA15_15920
Single gene
DOOR ID:
3774871
SAEMRSA15_15920
(lysP)
View Structure
12
1859539-1859674
(-)
FMN
1858368-1859412 (-)
ribD
SAEMRSA15_16770
Operon
DOOR ID:
1375829
SAEMRSA15_16740
(ribH)
,
SAEMRSA15_16750
(ribA)
,
SAEMRSA15_16760
(ribE)
,
SAEMRSA15_16770
(ribD)
View Structure
13
1880054-1880164
(-)
SAM
1878754-1879948 (-)
SAEMRSA15_16980
SAEMRSA15_16980
Single gene
DOOR ID:
3774927
SAEMRSA15_16980
View Structure
14
2178082-2178184
(-)
TPP
2177312-2178002 (-)
tenA
SAEMRSA15_20030
Operon
DOOR ID:
1375901
SAEMRSA15_20000
(thiE)
,
SAEMRSA15_20010
(thiM)
,
SAEMRSA15_20020
(thiD)
,
SAEMRSA15_20030
(tenA)
View Structure
15
2233674-2233890
(-)
glmS
2231666-2233472 (-)
glmS
SAEMRSA15_20610
Single gene
DOOR ID:
3775048
SAEMRSA15_20610
(glmS)
View Structure
16
2400209-2400304
(-)
SAM
2398818-2400198 (-)
SAEMRSA15_22240
SAEMRSA15_22240
Single gene
DOOR ID:
3775115
SAEMRSA15_22240
View Structure
Genome:
Staphylococcus aureus subsp. aureus HO 5096 0412
(
NC_017763.1
);
Phylum:
Firmicutes
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aureus HO 5096 0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"404496-404598";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"404828-405407";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:15:"SAEMRSA15_03400";i:14;s:6:"Operon";i:15;s:7:"1375556";i:16;s:86:"SAEMRSA15_03430(guaA);SAEMRSA15_03420(guaB);SAEMRSA15_03410(pbuX);SAEMRSA15_03400(xpt)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"734036-734082";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"733197-733866";i:10;s:1:"-";i:11;s:15:"SAEMRSA15_06380";i:12;s:0:"";i:13;s:15:"SAEMRSA15_06380";i:14;s:6:"Operon";i:15;s:7:"1375621";i:16;s:47:"SAEMRSA15_06380;SAEMRSA15_06370;SAEMRSA15_06360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 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0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1391626-1391801";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1391882-1393088";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:15:"SAEMRSA15_12560";i:14;s:6:"Operon";i:15;s:7:"1375740";i:16;s:108:"SAEMRSA15_12560(lysC);SAEMRSA15_12570(asd);SAEMRSA15_12580(dapA);SAEMRSA15_12590(dapB);SAEMRSA15_12600(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1516090-1516224";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1515482-1516034";i:10;s:1:"-";i:11;s:15:"SAEMRSA15_13440";i:12;s:0:"";i:13;s:15:"SAEMRSA15_13440";i:14;s:11:"Single gene";i:15;s:7:"3774815";i:16;s:15:"SAEMRSA15_13440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 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0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1859539-1859674";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1858368-1859412";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:15:"SAEMRSA15_16770";i:14;s:6:"Operon";i:15;s:7:"1375829";i:16;s:87:"SAEMRSA15_16740(ribH);SAEMRSA15_16750(ribA);SAEMRSA15_16760(ribE);SAEMRSA15_16770(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1880054-1880164";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1878754-1879948";i:10;s:1:"-";i:11;s:15:"SAEMRSA15_16980";i:12;s:0:"";i:13;s:15:"SAEMRSA15_16980";i:14;s:11:"Single gene";i:15;s:7:"3774927";i:16;s:15:"SAEMRSA15_16980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017763.1";i:2;s:48:"Staphylococcus aureus subsp. aureus HO 5096 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0412";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2400209-2400304";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2398818-2400198";i:10;s:1:"-";i:11;s:15:"SAEMRSA15_22240";i:12;s:0:"";i:13;s:15:"SAEMRSA15_22240";i:14;s:11:"Single gene";i:15;s:7:"3775115";i:16;s:15:"SAEMRSA15_22240";i:17;s:0:"";i:18;s:15:"View Structure ";}}