Genome: Bacillus sp. JS (NC_017743.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 204303-204473 (+)glmS204562-206365 (+)MY9_0183

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		MY9_0183Operon

DOOR ID: 1286035		MY9_0183,
MY9_0182		 View Structure
2 481550-481693 (+)ydaO-yuaA481714-481828 (-)MY9_0451

MY9_0451Single gene

DOOR ID: 3772313		MY9_0451 View Structure
3 498206-498336 (+)ydaO-yuaA498402-499647 (+)MY9_0470

Proton/sodium-glutamate symport protein		MY9_0470Operon

DOOR ID: 1286103		MY9_0472,
MY9_0471,
MY9_0470		 View Structure
4 646578-646677 (-)purine645355-646522 (-)MY9_0643

Major facilitator superfamily transporter		MY9_0643Single gene

DOOR ID: 3772397		MY9_0643 View Structure
5 721492-721593 (+)purine721727-723050 (+)MY9_0712

PbuG		MY9_0712Single gene

DOOR ID: 3772412		MY9_0712 View Structure
6 725432-725533 (+)purine725674-726163 (+)MY9_0717

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		MY9_0717Operon

DOOR ID: 1286154		MY9_0728,
MY9_0727,
MY9_0726,
MY9_0725,
MY9_0724,
MY9_0723,
MY9_0722,
MY9_0721,
MY9_0720,
MY9_0719,
MY9_0718,
MY9_0717		 View Structure
7 1008424-1008531 (+)TPP1008663-1010436 (+)MY9_0970

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		MY9_0970Operon

DOOR ID: 1286200		MY9_0970,
MY9_0969,
MY9_0968		 View Structure
8 1228585-1228702 (-)SAM1226656-1228495 (-)MY9_1199

MY9_1199Single gene

DOOR ID: 3772620		MY9_1199 View Structure
9 1290365-1290473 (+)TPP1290552-1291263 (+)MY9_1270

Aminopyrimidine aminohydrolase 		MY9_1270Operon

DOOR ID: 1286260		MY9_1276,
MY9_1275,
MY9_1274,
MY9_1273,
MY9_1272,
MY9_1271,
MY9_1270		 View Structure
10 1306402-1306522 (+)SAM1306565-1307711 (+)MY9_1295

Cystathionine gamma-synthase		MY9_1295Operon

DOOR ID: 1286264		MY9_1296,
MY9_1295,
MY9_1294		 View Structure
11 1425161-1425272 (+)ykkC-yxkD1425349-1425688 (+)MY9_1434

Efflux transporter		MY9_1434Operon

DOOR ID: 1286283		MY9_1435,
MY9_1434		 View Structure
12 1435273-1435428 (-)SAM1432856-1435145 (-)MY9_1445

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		MY9_1445Operon

DOOR ID: 1286286		MY9_1446,
MY9_1445		 View Structure
13 1441277-1441389 (-)TPP1440576-1441179 (-)MY9_1453

Thiamine binding protein		MY9_1453Operon

DOOR ID: 1286288		MY9_1453,
MY9_1452,
MY9_1451,
MY9_1450		 View Structure
14 1445149-1445314 (+)ykoK1445544-1446900 (+)MY9_1458

Magnesium transporter MgtE		MY9_1458Operon

DOOR ID: 1286290		MY9_1458,
MY9_1457		 View Structure
15 1460158-1460260 (+)yybP-ykoY1461424-1462180 (+)MY9_1473

RNA polymerase sigma factor SigI		MY9_1473Operon

DOOR ID: 1286293		MY9_1474,
MY9_1473		 View Structure
16 1474074-1474230 (-)SAM1472787-1473984 (-)MY9_1485

Methylthioribose kinase (MTR kinase) (00)		MY9_1485Operon

DOOR ID: 1286296		MY9_1485,
MY9_1484		 View Structure
17 1476423-1476523 (+)SAM1476580-1477825 (+)MY9_1488

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		MY9_1488Operon

DOOR ID: 1286297		MY9_1491,
MY9_1490,
MY9_1489,
MY9_1488		 View Structure
18 1488807-1488851 (+)PreQ11488978-1489638 (+)MY9_1501

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		MY9_1501Operon

DOOR ID: 1286299		MY9_1503,
MY9_1502,
MY9_1501		 View Structure
19 1653719-1653820 (+)TPP1653904-1655185 (+)MY9_1679

MY9_1679Operon

DOOR ID: 1286339		MY9_1686,
MY9_1685,
MY9_1684,
MY9_1683,
MY9_1682,
MY9_1681,
MY9_1680,
MY9_1679		 View Structure
20 1676466-1676571 (+)SAM1676733-1677435 (+)MY9_1703

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		MY9_1703Operon

DOOR ID: 1286343		MY9_1709,
MY9_1708,
MY9_1707,
MY9_1706,
MY9_1705,
MY9_1704,
MY9_1703		 View Structure
21 2077683-2077774 (-)SAM2076552-2077566 (-)MY9_2025

Putative 2-hydroxyacid dehydrogenase		MY9_2025Operon

DOOR ID: 1286406		MY9_2025,
MY9_2024		 View Structure
22 2226067-2226167 (-)purine2225391-2225976 (-)MY9_2211

Xanthine phosphoribosyltransferase (XPRTase) (2)		MY9_2211Operon

DOOR ID: 1286442		MY9_2211,
MY9_2210		 View Structure
23 2316750-2316884 (-)FMN2316622-2316736 (-)MY9_2317

YpzE		MY9_2317Operon

DOOR ID: 1286468		MY9_2318,
MY9_2317,
MY9_2316		 View Structure
24 2337413-2337557 (-)FMN2336197-2337283 (-)MY9_2341

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		MY9_2341Operon

DOOR ID: 1286473		MY9_2342,
MY9_2341,
MY9_2340,
MY9_2339,
MY9_2338		 View Structure
25 2456059-2456160 (-)glycine2454798-2455887 (-)MY9_2479

Aminomethyltransferase (0) (Glycine cleavage system T protein)		MY9_2479Operon

DOOR ID: 1286503		MY9_2479,
MY9_2478,
MY9_2477		 View Structure
26 2774094-2774273 (-)lysine2772741-2773968 (-)MY9_2838

Aspartokinase 		MY9_2838Single gene

DOOR ID: 3773196		MY9_2838 View Structure
27 2993878-2994016 (-)SAM2992507-2993710 (-)MY9_3058

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		MY9_3058Single gene

DOOR ID: 3773266		MY9_3058 View Structure
28 3043882-3043983 (+)TPP3044082-3044661 (+)MY9_3106

Thiamin permease		MY9_3106Single gene

DOOR ID: 3773282		MY9_3106 View Structure
29 3052972-3053120 (+)ydaO-yuaA3053193-3053862 (+)MY9_3116

KtrA		MY9_3116Operon

DOOR ID: 1286640		MY9_3117,
MY9_3116		 View Structure
30 3242367-3242473 (-)SAM3241235-3242333 (-)MY9_3313

Methionine import ATP-binding protein MetN 		MY9_3313Operon

DOOR ID: 1286675		MY9_3313,
MY9_3312,
MY9_3311		 View Structure
31 3282513-3282653 (-)cobalamin3281462-3282407 (-)MY9_3359

Putative lipoprotein		MY9_3359Operon

DOOR ID: 1286685		MY9_3359,
MY9_3358,
MY9_3357,
MY9_3356,
MY9_3355,
MY9_3354		 View Structure
32 3299267-3299446 (-)lysine3297753-3299163 (-)MY9_3379

Amino acid transporter YvsH		MY9_3379Single gene

DOOR ID: 3773381		MY9_3379 View Structure
33 3891789-3891891 (-)ykkC-yxkD3890875-3891712 (-)MY9_4000

Efflux transporter		MY9_4000Single gene

DOOR ID: 3773607		MY9_4000 View Structure
34 3899253-3899359 (+)SAM3899365-3900574 (+)MY9_4011

Cobalamin-independent synthase; Catalytic domain-containing protein		MY9_4011Single gene

DOOR ID: 3773611		MY9_4011 View Structure
35 3900643-3900749 (+)SAM3900826-3901963 (+)MY9_4012

Cobalamin-independent methionine synthase; Catalytic domain-containing protein		MY9_4012Single gene

DOOR ID: 3773612		MY9_4012 View Structure
36 3906990-3907091 (+)purine3907218-3908412 (+)MY9_4020

Nucleoside permease		MY9_4020Single gene

DOOR ID: 3773614		MY9_4020 View Structure
37 4080739-4080823 (-)yybP-ykoY4080519-4080675 (-)MY9_4199

MY9_4199Operon

DOOR ID: 1286855		MY9_4199,
MY9_4198		 View Structure