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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
177480-177657
(+)
yybP-ykoY
177664-178249 (+)
S70_00925
Putative manganese efflux pump MntP
S70_00925
Single gene
DOOR ID:
3768236
S70_00925
View Structure
2
260144-260234
(-)
TPP
259293-260091 (-)
S70_01300
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
S70_01300
Single gene
DOOR ID:
3768263
S70_01300
View Structure
3
846380-846551
(-)
ykoK
845234-846305 (-)
S70_04050
Magnesium transport protein MgtE
S70_04050
Single gene
DOOR ID:
3768525
S70_04050
View Structure
4
1828838-1828949
(+)
TPP
1829149-1831099 (+)
S70_08560
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
S70_08560
Operon
DOOR ID:
1085874
S70_08560,
S70_08565,
S70_08570,
S70_08575,
S70_08580,
S70_08585
(thiH)
,
S70_08590
View Structure
5
2430755-2430951
(+)
cobalamin
2431022-2432909 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
S70_11295
Operon
DOOR ID:
1085982
S70_11295
(btuB)
,
S70_11300
View Structure
6
2835509-2835578
(+)
fluoride
2835814-2836195 (+)
S70_13275
Putative fluoride ion transporter CrcB
S70_13275
Single gene
DOOR ID:
3769201
S70_13275
View Structure
7
3094202-3094352
(+)
FMN
3094508-3095162 (+)
S70_14580
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
S70_14580
Single gene
DOOR ID:
3769295
S70_14580
View Structure
8
3151911-3152009
(-)
TPP
3150846-3151851 (-)
S70_14840
Thiamine ABC transporter substrate-binding protein
S70_14840
Operon
DOOR ID:
1086116
S70_14820,
S70_14830
(thiQ)
,
S70_14835
(thiP)
,
S70_14840
View Structure
9
3390115-3390255
(+)
MOCO
3391252-3391732 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
S70_15960
Operon
DOOR ID:
1086160
S70_15955
(moaA)
,
S70_15960
(moaC)
,
S70_15965,
S70_15970
(moaE)
View Structure
10
4002320-4002391
(+)
fluoride
4002495-4002876 (+)
S70_19145
Putative fluoride ion transporter CrcB
S70_19145
Single gene
DOOR ID:
3769620
S70_19145
View Structure
Genome:
Providencia stuartii MRSN 2154
(
NC_017731.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2430755-2430951";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2431022-2432909";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"S70_11295";i:14;s:6:"Operon";i:15;s:7:"1085982";i:16;s:25:"S70_11295(btuB);S70_11300";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2835509-2835578";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2835814-2836195";i:10;s:1:"+";i:11;s:9:"S70_13275";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"S70_13275";i:14;s:11:"Single gene";i:15;s:7:"3769201";i:16;s:9:"S70_13275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3094202-3094352";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3094508-3095162";i:10;s:1:"+";i:11;s:9:"S70_14580";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"S70_14580";i:14;s:11:"Single gene";i:15;s:7:"3769295";i:16;s:9:"S70_14580";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3151911-3152009";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3150846-3151851";i:10;s:1:"-";i:11;s:9:"S70_14840";i:12;s:50:"Thiamine ABC transporter substrate-binding protein";i:13;s:9:"S70_14840";i:14;s:6:"Operon";i:15;s:7:"1086116";i:16;s:51:"S70_14820;S70_14830(thiQ);S70_14835(thiP);S70_14840";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3390115-3390255";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3391252-3391732";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"S70_15960";i:14;s:6:"Operon";i:15;s:7:"1086160";i:16;s:57:"S70_15955(moaA);S70_15960(moaC);S70_15965;S70_15970(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017731.1";i:2;s:31:"Providencia stuartii MRSN 2154 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4002320-4002391";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4002495-4002876";i:10;s:1:"+";i:11;s:9:"S70_19145";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"S70_19145";i:14;s:11:"Single gene";i:15;s:7:"3769620";i:16;s:9:"S70_19145";i:17;s:0:"";i:18;s:15:"View Structure ";}}
