About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
147459-147561
(+)
SAM
147647-149222 (+)
MUO_00860
MUO_00860
Single gene
DOOR ID:
3763833
MUO_00860
View Structure
2
324179-324298
(-)
SAM
323248-324070 (-)
MUO_01620
MUO_01620
Operon
DOOR ID:
1373238
MUO_01620,
MUO_01615,
MUO_01610,
MUO_01605
View Structure
3
351107-351212
(+)
TPP
351298-351973 (+)
MUO_01750
MUO_01750
Operon
DOOR ID:
1373241
MUO_01765
(thiE)
,
MUO_01760,
MUO_01755,
MUO_01750
View Structure
4
615257-615358
(-)
purine
613867-615163 (-)
MUO_03115
MUO_03115
Single gene
DOOR ID:
3764041
MUO_03115
View Structure
5
642057-642157
(-)
SAM
640670-641948 (-)
MUO_03225
MUO_03225
Operon
DOOR ID:
1373286
MUO_03225,
MUO_03220
(metX)
View Structure
6
768010-768205
(+)
glmS
768290-770096 (+)
MUO_03975
MUO_03975
Single gene
DOOR ID:
3764105
MUO_03975
View Structure
7
824905-825102
(-)
lysine
823354-824815 (-)
MUO_04250
MUO_04250
Single gene
DOOR ID:
3764133
MUO_04250
View Structure
8
879756-879853
(+)
SAM
879947-881051 (+)
MUO_04485
MUO_04485
Single gene
DOOR ID:
3764161
MUO_04485
View Structure
9
904894-904941
(+)
PreQ1
904946-905435 (+)
MUO_04600
MUO_04600
Single gene
DOOR ID:
3764169
MUO_04600
View Structure
10
1019140-1019243
(+)
yybP-ykoY
1019341-1020109 (+)
MUO_05230
MUO_05230
Single gene
DOOR ID:
3764201
MUO_05230
View Structure
11
1155416-1155606
(+)
cobalamin
1155759-1156644 (-)
MUO_05945
MUO_05945
Single gene
DOOR ID:
3764249
MUO_05945
View Structure
12
1173686-1173829
(+)
cobalamin
1174246-1175386 (+)
MUO_06050
MUO_06050
Single gene
DOOR ID:
3764251
MUO_06050
View Structure
13
1190432-1190609
(+)
cobalamin
1190770-1192129 (+)
MUO_06145
MUO_06145
Operon
DOOR ID:
1373398
MUO_06145,
MUO_06150
(cobD)
,
MUO_06155
(cbiC)
,
MUO_06160
(cbiD)
,
MUO_06165,
MUO_06170,
MUO_06175
(cbiF)
,
MUO_06180,
MUO_06185,
MUO_06190,
MUO_06195,
MUO_06200,
MUO_06205,
MUO_06210,
MUO_06215,
MUO_06220,
MUO_06225
View Structure
14
1349373-1349464
(+)
glycine
1349547-1350636 (+)
gcvT
MUO_06960
Operon
DOOR ID:
1373430
MUO_06960
(gcvT)
,
MUO_06965,
MUO_06970
View Structure
15
1437694-1437804
(-)
TPP
1437065-1437626 (-)
MUO_07370
MUO_07370
Single gene
DOOR ID:
3764328
MUO_07370
View Structure
16
1694286-1694394
(-)
SAM
1692979-1694179 (-)
MUO_08560
MUO_08560
Single gene
DOOR ID:
3764400
MUO_08560
View Structure
17
1717232-1717338
(-)
SAM
1714827-1717125 (-)
MUO_08645
MUO_08645
Operon
DOOR ID:
1373510
MUO_08630,
MUO_08635,
MUO_08640,
MUO_08645
View Structure
18
1936632-1936732
(-)
purine
1935971-1936550 (-)
MUO_09670
MUO_09670
Operon
DOOR ID:
1373551
MUO_09665,
MUO_09670
View Structure
19
2004609-2004731
(-)
FMN
2003807-2004419 (-)
MUO_09980
MUO_09980
Single gene
DOOR ID:
3764486
MUO_09980
View Structure
20
2441524-2441642
(-)
SAM
2440411-2441434 (-)
MUO_12070
MUO_12070
Operon
DOOR ID:
1373653
MUO_12060,
MUO_12065,
MUO_12070
View Structure
21
2714935-2715101
(-)
ykoK
2712079-2714650 (-)
MUO_13455
MUO_13455
Operon
DOOR ID:
1373713
MUO_13445,
MUO_13450,
MUO_13455
View Structure
Genome:
Listeria monocytogenes 07PF0776
(
NC_017728.1
);
Phylum:
Firmicutes
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"147459-147561";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"147647-149222";i:10;s:1:"+";i:11;s:9:"MUO_00860";i:12;s:0:"";i:13;s:9:"MUO_00860";i:14;s:11:"Single gene";i:15;s:7:"3763833";i:16;s:9:"MUO_00860";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"324179-324298";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"323248-324070";i:10;s:1:"-";i:11;s:9:"MUO_01620";i:12;s:0:"";i:13;s:9:"MUO_01620";i:14;s:6:"Operon";i:15;s:7:"1373238";i:16;s:39:"MUO_01620;MUO_01615;MUO_01610;MUO_01605";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"351107-351212";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"351298-351973";i:10;s:1:"+";i:11;s:9:"MUO_01750";i:12;s:0:"";i:13;s:9:"MUO_01750";i:14;s:6:"Operon";i:15;s:7:"1373241";i:16;s:45:"MUO_01765(thiE);MUO_01760;MUO_01755;MUO_01750";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"615257-615358";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"613867-615163";i:10;s:1:"-";i:11;s:9:"MUO_03115";i:12;s:0:"";i:13;s:9:"MUO_03115";i:14;s:11:"Single gene";i:15;s:7:"3764041";i:16;s:9:"MUO_03115";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"642057-642157";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"640670-641948";i:10;s:1:"-";i:11;s:9:"MUO_03225";i:12;s:0:"";i:13;s:9:"MUO_03225";i:14;s:6:"Operon";i:15;s:7:"1373286";i:16;s:25:"MUO_03225;MUO_03220(metX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"768010-768205";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"768290-770096";i:10;s:1:"+";i:11;s:9:"MUO_03975";i:12;s:0:"";i:13;s:9:"MUO_03975";i:14;s:11:"Single gene";i:15;s:7:"3764105";i:16;s:9:"MUO_03975";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"824905-825102";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"823354-824815";i:10;s:1:"-";i:11;s:9:"MUO_04250";i:12;s:0:"";i:13;s:9:"MUO_04250";i:14;s:11:"Single gene";i:15;s:7:"3764133";i:16;s:9:"MUO_04250";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"879756-879853";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"879947-881051";i:10;s:1:"+";i:11;s:9:"MUO_04485";i:12;s:0:"";i:13;s:9:"MUO_04485";i:14;s:11:"Single gene";i:15;s:7:"3764161";i:16;s:9:"MUO_04485";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"904894-904941";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"904946-905435";i:10;s:1:"+";i:11;s:9:"MUO_04600";i:12;s:0:"";i:13;s:9:"MUO_04600";i:14;s:11:"Single gene";i:15;s:7:"3764169";i:16;s:9:"MUO_04600";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1019140-1019243";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1019341-1020109";i:10;s:1:"+";i:11;s:9:"MUO_05230";i:12;s:0:"";i:13;s:9:"MUO_05230";i:14;s:11:"Single gene";i:15;s:7:"3764201";i:16;s:9:"MUO_05230";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1155416-1155606";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1155759-1156644";i:10;s:1:"-";i:11;s:9:"MUO_05945";i:12;s:0:"";i:13;s:9:"MUO_05945";i:14;s:11:"Single gene";i:15;s:7:"3764249";i:16;s:9:"MUO_05945";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1173686-1173829";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1174246-1175386";i:10;s:1:"+";i:11;s:9:"MUO_06050";i:12;s:0:"";i:13;s:9:"MUO_06050";i:14;s:11:"Single gene";i:15;s:7:"3764251";i:16;s:9:"MUO_06050";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1190432-1190609";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1190770-1192129";i:10;s:1:"+";i:11;s:9:"MUO_06145";i:12;s:0:"";i:13;s:9:"MUO_06145";i:14;s:6:"Operon";i:15;s:7:"1373398";i:16;s:193:"MUO_06145;MUO_06150(cobD);MUO_06155(cbiC);MUO_06160(cbiD);MUO_06165;MUO_06170;MUO_06175(cbiF);MUO_06180;MUO_06185;MUO_06190;MUO_06195;MUO_06200;MUO_06205;MUO_06210;MUO_06215;MUO_06220;MUO_06225";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1349373-1349464";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1349547-1350636";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:9:"MUO_06960";i:14;s:6:"Operon";i:15;s:7:"1373430";i:16;s:35:"MUO_06960(gcvT);MUO_06965;MUO_06970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1437694-1437804";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1437065-1437626";i:10;s:1:"-";i:11;s:9:"MUO_07370";i:12;s:0:"";i:13;s:9:"MUO_07370";i:14;s:11:"Single gene";i:15;s:7:"3764328";i:16;s:9:"MUO_07370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1694286-1694394";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1692979-1694179";i:10;s:1:"-";i:11;s:9:"MUO_08560";i:12;s:0:"";i:13;s:9:"MUO_08560";i:14;s:11:"Single gene";i:15;s:7:"3764400";i:16;s:9:"MUO_08560";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1717232-1717338";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1714827-1717125";i:10;s:1:"-";i:11;s:9:"MUO_08645";i:12;s:0:"";i:13;s:9:"MUO_08645";i:14;s:6:"Operon";i:15;s:7:"1373510";i:16;s:39:"MUO_08630;MUO_08635;MUO_08640;MUO_08645";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1936632-1936732";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1935971-1936550";i:10;s:1:"-";i:11;s:9:"MUO_09670";i:12;s:0:"";i:13;s:9:"MUO_09670";i:14;s:6:"Operon";i:15;s:7:"1373551";i:16;s:19:"MUO_09665;MUO_09670";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2004609-2004731";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2003807-2004419";i:10;s:1:"-";i:11;s:9:"MUO_09980";i:12;s:0:"";i:13;s:9:"MUO_09980";i:14;s:11:"Single gene";i:15;s:7:"3764486";i:16;s:9:"MUO_09980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2441524-2441642";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2440411-2441434";i:10;s:1:"-";i:11;s:9:"MUO_12070";i:12;s:0:"";i:13;s:9:"MUO_12070";i:14;s:6:"Operon";i:15;s:7:"1373653";i:16;s:29:"MUO_12060;MUO_12065;MUO_12070";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_017728.1";i:2;s:32:"Listeria monocytogenes 07PF0776 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2714935-2715101";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2712079-2714650";i:10;s:1:"-";i:11;s:9:"MUO_13455";i:12;s:0:"";i:13;s:9:"MUO_13455";i:14;s:6:"Operon";i:15;s:7:"1373713";i:16;s:29:"MUO_13445;MUO_13450;MUO_13455";i:17;s:0:"";i:18;s:15:"View Structure ";}}