About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15948-16046
(+)
SAM
16084-17074 (+)
ST398NM01_0012
Homoserine O-acetyltransferase (1)
ST398NM01_0012
Operon
DOOR ID:
1372485
ST398NM01_0016,
ST398NM01_0015,
ST398NM01_0014,
ST398NM01_0013,
ST398NM01_2800,
ST398NM01_0012
View Structure
2
377518-377620
(+)
purine
377850-378429 (+)
ST398NM01_0465
Xanthine phosphoribosyltransferase (XPRTase) (2)
ST398NM01_0465
Operon
DOOR ID:
1372545
ST398NM01_0468,
ST398NM01_0467,
ST398NM01_0466,
ST398NM01_0465
View Structure
3
708502-708548
(-)
PreQ1
707663-708332 (-)
ST398NM01_0789
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
ST398NM01_0789
Operon
DOOR ID:
1372612
ST398NM01_0789,
ST398NM01_0788,
ST398NM01_0787
View Structure
4
816836-816939
(+)
SAM
817027-818053 (+)
ST398NM01_0892
Methionine import ATP-binding protein MetN
ST398NM01_0892
Operon
DOOR ID:
1372634
ST398NM01_0894,
ST398NM01_0893,
ST398NM01_0892
View Structure
5
858961-859051
(+)
preQ1-II
860057-860435 (+)
ST398NM01_0938
S1-type RNA-binding domain protein
ST398NM01_0938
Single gene
DOOR ID:
3762528
ST398NM01_0938
View Structure
6
934899-935005
(+)
yybP-ykoY
935074-935884 (+)
ST398NM01_1017
TerC
ST398NM01_1017
Single gene
DOOR ID:
3762553
ST398NM01_1017
View Structure
7
994720-994820
(-)
TPP
994067-994643 (-)
ST398NM01_1075
Hydroxymethylpyrimidine transport system permease protein
ST398NM01_1075
Operon
DOOR ID:
1372669
ST398NM01_1075,
ST398NM01_1074,
ST398NM01_1073
View Structure
8
1335946-1336121
(+)
lysine
1336202-1337408 (+)
ST398NM01_1394
Aspartokinase
ST398NM01_1394
Operon
DOOR ID:
1372739
ST398NM01_1398,
ST398NM01_1397,
ST398NM01_1396,
ST398NM01_1395,
ST398NM01_1394
View Structure
9
1460640-1460774
(-)
FMN
1460032-1460602 (-)
ST398NM01_1484
Riboflavin transporter
ST398NM01_1484
Single gene
DOOR ID:
3762728
ST398NM01_1484
View Structure
10
1511916-1512013
(-)
glycine
1510749-1511841 (-)
ST398NM01_1602
Aminomethyltransferase (0) (Glycine cleavage system T protein)
ST398NM01_1602
Operon
DOOR ID:
1372774
ST398NM01_1602,
ST398NM01_1601,
ST398NM01_1600
View Structure
11
1642135-1642310
(-)
lysine
1640496-1641990 (-)
ST398NM01_1736
Lysine-specific permease
ST398NM01_1736
Single gene
DOOR ID:
3762770
ST398NM01_1736
View Structure
12
1755231-1755366
(-)
FMN
1754060-1755134 (-)
ST398NM01_1822
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
ST398NM01_1822
Operon
DOOR ID:
1372822
ST398NM01_1822,
ST398NM01_1821,
ST398NM01_1820,
ST398NM01_1819
View Structure
13
1770586-1770697
(-)
SAM
1769286-1770582 (-)
ST398NM01_1838
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
ST398NM01_1838
Single gene
DOOR ID:
3762823
ST398NM01_1838
View Structure
14
2061023-2061125
(-)
TPP
2060253-2060943 (-)
ST398NM01_2137
Aminopyrimidine aminohydrolase
ST398NM01_2137
Operon
DOOR ID:
1372891
ST398NM01_2137,
ST398NM01_2136,
ST398NM01_2135,
ST398NM01_2134
View Structure
15
2128783-2128999
(-)
glmS
2126775-2128599 (-)
ST398NM01_2209
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
ST398NM01_2209
Single gene
DOOR ID:
3762959
ST398NM01_2209
View Structure
16
2295676-2295771
(-)
SAM
2294288-2295665 (-)
ST398NM01_2377
NhaC
ST398NM01_2377
Single gene
DOOR ID:
3763028
ST398NM01_2377
View Structure
Genome:
Staphylococcus aureus subsp. aureus 71193
(
NC_017673.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15948-16046";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16084-17074";i:10;s:1:"+";i:11;s:14:"ST398NM01_0012";i:12;s:34:"Homoserine O-acetyltransferase (1)";i:13;s:14:"ST398NM01_0012";i:14;s:6:"Operon";i:15;s:7:"1372485";i:16;s:89:"ST398NM01_0016;ST398NM01_0015;ST398NM01_0014;ST398NM01_0013;ST398NM01_2800;ST398NM01_0012";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"377518-377620";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"377850-378429";i:10;s:1:"+";i:11;s:14:"ST398NM01_0465";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:14:"ST398NM01_0465";i:14;s:6:"Operon";i:15;s:7:"1372545";i:16;s:59:"ST398NM01_0468;ST398NM01_0467;ST398NM01_0466;ST398NM01_0465";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"708502-708548";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"707663-708332";i:10;s:1:"-";i:11;s:14:"ST398NM01_0789";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:14:"ST398NM01_0789";i:14;s:6:"Operon";i:15;s:7:"1372612";i:16;s:44:"ST398NM01_0789;ST398NM01_0788;ST398NM01_0787";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"816836-816939";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"817027-818053";i:10;s:1:"+";i:11;s:14:"ST398NM01_0892";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:14:"ST398NM01_0892";i:14;s:6:"Operon";i:15;s:7:"1372634";i:16;s:44:"ST398NM01_0894;ST398NM01_0893;ST398NM01_0892";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"858961-859051";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"860057-860435";i:10;s:1:"+";i:11;s:14:"ST398NM01_0938";i:12;s:34:"S1-type RNA-binding domain protein";i:13;s:14:"ST398NM01_0938";i:14;s:11:"Single gene";i:15;s:7:"3762528";i:16;s:14:"ST398NM01_0938";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"934899-935005";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"935074-935884";i:10;s:1:"+";i:11;s:14:"ST398NM01_1017";i:12;s:4:"TerC";i:13;s:14:"ST398NM01_1017";i:14;s:11:"Single gene";i:15;s:7:"3762553";i:16;s:14:"ST398NM01_1017";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"994720-994820";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"994067-994643";i:10;s:1:"-";i:11;s:14:"ST398NM01_1075";i:12;s:57:"Hydroxymethylpyrimidine transport system permease protein";i:13;s:14:"ST398NM01_1075";i:14;s:6:"Operon";i:15;s:7:"1372669";i:16;s:44:"ST398NM01_1075;ST398NM01_1074;ST398NM01_1073";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1335946-1336121";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1336202-1337408";i:10;s:1:"+";i:11;s:14:"ST398NM01_1394";i:12;s:14:"Aspartokinase ";i:13;s:14:"ST398NM01_1394";i:14;s:6:"Operon";i:15;s:7:"1372739";i:16;s:74:"ST398NM01_1398;ST398NM01_1397;ST398NM01_1396;ST398NM01_1395;ST398NM01_1394";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1460640-1460774";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1460032-1460602";i:10;s:1:"-";i:11;s:14:"ST398NM01_1484";i:12;s:22:"Riboflavin transporter";i:13;s:14:"ST398NM01_1484";i:14;s:11:"Single gene";i:15;s:7:"3762728";i:16;s:14:"ST398NM01_1484";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1511916-1512013";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1510749-1511841";i:10;s:1:"-";i:11;s:14:"ST398NM01_1602";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:14:"ST398NM01_1602";i:14;s:6:"Operon";i:15;s:7:"1372774";i:16;s:44:"ST398NM01_1602;ST398NM01_1601;ST398NM01_1600";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1642135-1642310";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1640496-1641990";i:10;s:1:"-";i:11;s:14:"ST398NM01_1736";i:12;s:24:"Lysine-specific permease";i:13;s:14:"ST398NM01_1736";i:14;s:11:"Single gene";i:15;s:7:"3762770";i:16;s:14:"ST398NM01_1736";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1755231-1755366";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1754060-1755134";i:10;s:1:"-";i:11;s:14:"ST398NM01_1822";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:14:"ST398NM01_1822";i:14;s:6:"Operon";i:15;s:7:"1372822";i:16;s:59:"ST398NM01_1822;ST398NM01_1821;ST398NM01_1820;ST398NM01_1819";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1770586-1770697";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1769286-1770582";i:10;s:1:"-";i:11;s:14:"ST398NM01_1838";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:14:"ST398NM01_1838";i:14;s:11:"Single gene";i:15;s:7:"3762823";i:16;s:14:"ST398NM01_1838";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2061023-2061125";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2060253-2060943";i:10;s:1:"-";i:11;s:14:"ST398NM01_2137";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:14:"ST398NM01_2137";i:14;s:6:"Operon";i:15;s:7:"1372891";i:16;s:59:"ST398NM01_2137;ST398NM01_2136;ST398NM01_2135;ST398NM01_2134";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2128783-2128999";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2126775-2128599";i:10;s:1:"-";i:11;s:14:"ST398NM01_2209";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:14:"ST398NM01_2209";i:14;s:11:"Single gene";i:15;s:7:"3762959";i:16;s:14:"ST398NM01_2209";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017673.1";i:2;s:42:"Staphylococcus aureus subsp. aureus 71193 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2295676-2295771";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2294288-2295665";i:10;s:1:"-";i:11;s:14:"ST398NM01_2377";i:12;s:4:"NhaC";i:13;s:14:"ST398NM01_2377";i:14;s:11:"Single gene";i:15;s:7:"3763028";i:16;s:14:"ST398NM01_2377";i:17;s:0:"";i:18;s:15:"View Structure ";}}