Genome: Paenibacillus mucilaginosus K02 (NC_017672.3); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 30807-30894 (+)c-di-GMP-I31005-31716 (+)B2K_00130

Uncharacterized protein		B2K_00130single gene

DOOR ID: 3758449		B2K_00130 View Structure
2 39548-39628 (+)ZMP-ZTP39727-40186 (+)B2K_00180

Ribose 5-phosphate isomerase		B2K_00180Operon

DOOR ID: 1284666		B2K_00185,
B2K_00180		 View Structure
3 479311-479394 (+)c-di-GMP-II479437-479566 (+)B2K_02050

B2K_02050Single gene

DOOR ID: 3758620		B2K_02050 View Structure
4 489658-489771 (+)TPP489960-491784 (+)B2K_02100

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		B2K_02100Single gene

DOOR ID: 3758627		B2K_02100 View Structure
5 634352-634452 (+)purine634708-636121 (+)B2K_02725

Permease		B2K_02725Single gene

DOOR ID: 3758709		B2K_02725 View Structure
6 866606-866710 (-)ykkC-yxkD865154-866522 (-)B2K_03770

Putrescine importer PuuP		B2K_03770Single gene

DOOR ID: 3758818		B2K_03770 View Structure
7 866871-866977 (+)ykkC-yxkD867042-867759 (+)B2K_03775

Urea carboxylase		B2K_03775Operon

DOOR ID: 1284783		B2K_03780,
B2K_03775		 View Structure
8 984368-984453 (+)c-di-GMP-I984561-985686 (+)B2K_04230

Beta-xylanase 		B2K_04230single gene

DOOR ID: 3758865		B2K_04230 View Structure
9 1072806-1072946 (+)TPP1073044-1073245 (+)B2K_04690

Sulfur carrier protein ThiS		B2K_04690Operon

DOOR ID: 1284808		B2K_04695 (thiG),
B2K_04690		 View Structure
10 1146041-1146236 (-)cobalamin1145126-1145897 (-)B2K_05010

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		B2K_05010Operon

DOOR ID: 1284824		B2K_05010,
B2K_05005,
B2K_05000,
B2K_04995		 View Structure
11 1229621-1229719 (-)purine1228131-1229568 (-)B2K_05415

FAD-dependent oxidoreductase		B2K_05415Single gene

DOOR ID: 3758966		B2K_05415 View Structure
12 1313342-1313486 (+)ydaO-yuaA1313561-1314914 (+)B2K_05845

V-type sodium ATP synthase subunit J		B2K_05845Operon

DOOR ID: 1284860		B2K_05855,
B2K_05850,
B2K_05845		 View Structure
13 1537233-1537373 (-)SAM1536002-1537022 (-)B2K_06845

Methionine import ATP-binding protein MetN 		B2K_06845Operon

DOOR ID: 1284892		B2K_06840,
B2K_06845,
B2K_06850		 View Structure
14 1617222-1617321 (-)purine1615815-1617153 (-)B2K_07185

Ethylammeline chlorohydrolase		B2K_07185Single gene

DOOR ID: 3759144		B2K_07185 View Structure
15 2907867-2907959 (-)c-di-GMP-I2906319-2907798 (-)B2K_12505

Diguanylate cyclase		B2K_12505single gene

DOOR ID: 3759671		B2K_12505 View Structure
16 2962947-2963087 (+)ydaO-yuaA2963247-2963574 (+)B2K_12715

B2K_12715Single gene

DOOR ID: 3759694		B2K_12715 View Structure
17 3095438-3095517 (+)ZMP-ZTP3095578-3096427 (+)B2K_13330

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		B2K_13330Single gene

DOOR ID: 3759754		B2K_13330 View Structure
18 3332389-3332488 (-)purine3331005-3332298 (-)B2K_14405

Guanine permease		B2K_14405Single gene

DOOR ID: 3759855		B2K_14405 View Structure
19 3449245-3449417 (+)FMN3449813-3450926 (+)B2K_15050

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		B2K_15050Operon

DOOR ID: 1285189		B2K_15050,
B2K_15055		 View Structure
20 3456511-3456607 (+)c-di-GMP-I3456752-3459218 (+)B2K_15090

Diguanylate cyclase		B2K_15090single gene

DOOR ID: 3759907		B2K_15090 View Structure
21 3857934-3858022 (+)c-di-GMP-I3858106-3858448 (+)B2K_16925

Uncharacterized protein		B2K_16925operon

DOOR ID: 1285268		B2K_16925,
B2K_16930		 View Structure
22 4055893-4056049 (-)FMN4054780-4055761 (-)B2K_17970

Multidrug transporter		B2K_17970Single gene

DOOR ID: 3760117		B2K_17970 View Structure
23 4832598-4832686 (-)yybP-ykoY4831712-4832489 (-)B2K_20750

Membrane protein		B2K_20750Single gene

DOOR ID: 3760397		B2K_20750 View Structure
24 5798375-5798524 (-)ydaO-yuaA5798089-5798257 (-)B2K_24225

B2K_24225Single gene

DOOR ID: 3760680		B2K_24225 View Structure
25 6031359-6031446 (+)c-di-GMP-I6031579-6031717 (+)B2K_25295

Uncharacterized protein		B2K_25295operon

DOOR ID: 1285549		B2K_25295,
B2K_25300		 View Structure
26 6054517-6054600 (+)c-di-GMP-II6054655-6054820 (+)B2K_25400

B2K_25400Single gene

DOOR ID: 3760803		B2K_25400 View Structure
27 6960300-6960400 (-)TPP6958798-6960154 (-)B2K_29450

Acetylornithine deacetylase		B2K_29450Operon

DOOR ID: 1285708		B2K_29445,
B2K_29450		 View Structure
28 7019492-7019630 (-)ydaO-yuaA7018596-7019421 (-)B2K_29695

Cell wall lytic activity		B2K_29695Single gene

DOOR ID: 3761186		B2K_29695 View Structure
29 7418504-7418609 (-)TPP7417758-7418352 (-)B2K_31335

Thiamine ABC transporter permease		B2K_31335Operon

DOOR ID: 1285785		B2K_31325,
B2K_31330,
B2K_31335		 View Structure
30 7477849-7477969 (-)ykkC-yxkD7476720-7477719 (-)B2K_31615

ABC transporter		B2K_31615Operon

DOOR ID: 1285791		B2K_31605,
B2K_31610,
B2K_31615		 View Structure
31 7635176-7635325 (-)SAM7634119-7635046 (-)B2K_32300

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		B2K_32300Operon

DOOR ID: 1285812		B2K_32295,
B2K_32300		 View Structure
32 7662366-7662591 (-)cobalamin7661156-7662143 (-)B2K_32430

ABC transporter substrate-binding protein		B2K_32430Operon

DOOR ID: 1285818		B2K_32425,
B2K_32430		 View Structure
33 7706589-7706800 (-)cobalamin7704297-7706304 (-)B2K_32630

Cobalt-precorrin-3B C(17)-methyltransferase		B2K_32630Single gene

DOOR ID: 3761462		B2K_32630 View Structure
34 7714987-7715186 (+)cobalamin7715321-7717547 (+)B2K_32670

Ribonucleoside-diphosphate reductase 		B2K_32670Single gene

DOOR ID: 3761468		B2K_32670 View Structure
35 7874199-7874283 (-)c-di-GMP-I7871345-7873973 (-)B2K_33335

Diguanylate cyclase		B2K_33335operon

DOOR ID: 1285845		B2K_33330,
B2K_33335		 View Structure
36 8076070-8076160 (-)yybP-ykoY8075652-8075946 (-)B2K_34250

B2K_34250Single gene

DOOR ID: 3761636		B2K_34250 View Structure
37 8184583-8184685 (-)purine8183914-8184400 (-)B2K_34770

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		B2K_34770Operon

DOOR ID: 1285896		B2K_34755,
B2K_34760,
B2K_34765,
B2K_34770		 View Structure
38 8185691-8185870 (+)ydaO-yuaA8185960-8186764 (+)B2K_34780

B2K_34780Single gene

DOOR ID: 3761684		B2K_34780 View Structure
39 8297225-8297308 (-)c-di-GMP-I8294548-8295565 (-)B2K_35250

Sugar ABC transporter permease		B2K_35250operon

DOOR ID: 1285912		B2K_35240,
B2K_35245,
B2K_35250		 View Structure
40 8330732-8331020 (-)glmS8328836-8330666 (-)B2K_35395

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		B2K_35395Operon

DOOR ID: 1285920		B2K_35390,
B2K_35395		 View Structure
41 8468322-8468543 (-)ydaO-yuaA8466811-8467951 (-)B2K_36085

B2K_36085Single gene

DOOR ID: 3761784		B2K_36085 View Structure
42 8516749-8516883 (+)ydaO-yuaA8516887-8517358 (+)B2K_36310

Hydrolase Nlp/P60		B2K_36310Single gene

DOOR ID: 3761808		B2K_36310 View Structure
43 8642044-8642133 (-)c-di-GMP-I8641892-8642006 (-)B2K_36930

Uncharacterized protein		B2K_36930single gene

DOOR ID: 3761883		B2K_36930 View Structure
44 8642361-8642457 (-)c-di-GMP-I8641892-8642006 (-)B2K_36930

Uncharacterized protein		B2K_36930single gene

DOOR ID: 3761883		B2K_36930 View Structure
45 8686993-8687089 (-)c-di-GMP-I8681585-8686898 (-)B2K_37095

Fibronectin type III		B2K_37095single gene

DOOR ID: 3761899		B2K_37095 View Structure
46 8762015-8762118 (-)purine8761249-8761846 (-)B2K_37465

Xanthine phosphoribosyltransferase (XPRTase) (2)		B2K_37465Operon

DOOR ID: 1285986		B2K_37460,
B2K_37465		 View Structure