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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
200191-200286
(-)
TPP
197930-200120 (-)
SMD_0159
SMD_0159
Operon
DOOR ID:
1082141
SMD_0158
(pnuC)
,
SMD_0159
View Structure
2
275461-275690
(-)
cobalamin
274613-275285 (-)
SMD_0224
SMD_0224
Operon
DOOR ID:
1082161
SMD_0223
(pncA)
,
SMD_0224
View Structure
3
568984-569207
(-)
cobalamin
567027-568869 (-)
SMD_0500
SMD_0500
Single gene
DOOR ID:
3757569
SMD_0500
View Structure
4
709209-709354
(+)
FMN
709431-710058 (+)
ribE
SMD_0615
Operon
DOOR ID:
1082250
SMD_0615
(ribE)
,
SMD_0616
(ribB)
,
SMD_0617
(ribH)
,
SMD_0618
(nusB)
,
SMD_0619
(thiL)
View Structure
5
766390-766473
(-)
SAH
764907-766353 (-)
sahH
SMD_0664
Single gene
DOOR ID:
3757598
SMD_0664
(sahH)
View Structure
6
1801342-1801405
(-)
fluoride
1800867-1801260 (-)
SMD_1623
SMD_1623
Operon
DOOR ID:
1082462
SMD_1623,
SMD_1624
View Structure
7
3498557-3498659
(+)
glycine
3498721-3501589 (+)
gcvP
SMD_3153
Single gene
DOOR ID:
3758063
SMD_3153
(gcvP)
View Structure
8
3562396-3562514
(-)
SAM
3561286-3562318 (-)
met2
SMD_3203
Operon
DOOR ID:
1082793
SMD_3201,
SMD_3202
(metB)
,
SMD_3203
(met2)
View Structure
9
3924393-3924493
(-)
TPP
3922465-3924310 (-)
thiC
SMD_3512
Operon
DOOR ID:
1082860
SMD_3511,
SMD_3512
(thiC)
View Structure
10
4268905-4268994
(+)
glycine
4269016-4269104 (+)
Glycine.2
SMD_3801
Single gene
DOOR ID:
3758421
SMD_3801
(Glycine.2)
View Structure
11
4269008-4269111
(+)
glycine
4269195-4269813 (+)
SMD_3802
SMD_3802
Single gene
DOOR ID:
3758229
SMD_3802
View Structure
12
4668058-4668147
(-)
yybP-ykoY
4667393-4667969 (-)
SMD_4157
SMD_4157
Single gene
DOOR ID:
3758315
SMD_4157
View Structure
13
4763394-4763469
(-)
SAH
4761150-4762257 (-)
glpQ
SMD_4234
Operon
DOOR ID:
1083015
SMD_4234
(glpQ)
,
SMD_4236,
SMD_4237
(yidC)
,
SMD_4238
(rnpA)
,
SMD_4239
(rpmH)
View Structure
Genome:
Stenotrophomonas maltophilia D457
(
NC_017671.1
);
Phylum:
Gammaproteobacteria
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