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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
74038-74137
(-)
TPP
73023-73803 (-)
tbpA
P12B_c0061
Operon
DOOR ID:
1282982
P12B_c0061
(tbpA)
,
P12B_c0060
(thiP)
,
P12B_c0059
(thiQ)
View Structure
2
837011-837155
(+)
MOCO
838153-838666 (+)
moaB
P12B_c0772
Operon
DOOR ID:
1283122
P12B_c0775
(moaE)
,
P12B_c0774
(moaD)
,
P12B_c0773
(moaC)
,
P12B_c0772
(moaB)
,
P12B_c0771
(moaA)
View Structure
3
2374136-2374232
(-)
TPP
2373312-2374101 (-)
thiM
P12B_c2202
Operon
DOOR ID:
1283390
P12B_c2199
(yegW)
,
P12B_c2200
(yegX)
,
P12B_c2201
(thiD)
,
P12B_c2202
(thiM)
View Structure
4
3432604-3432752
(-)
FMN
3431846-3432500 (-)
ribB
P12B_c3140
Single gene
DOOR ID:
3753284
P12B_c3140
(ribB)
View Structure
5
4473918-4474108
(+)
cobalamin
4474172-4476017 (+)
btuB
P12B_c4087
Operon
DOOR ID:
1283780
P12B_c4087
(btuB)
,
P12B_c4088
(murI)
View Structure
6
4506462-4506562
(-)
TPP
4504485-4506381 (-)
thiC
P12B_c4106
Operon
DOOR ID:
1283784
P12B_c4102
(thiH)
,
P12B_c4103
(thiG)
,
P12B_c4104
(thiF)
,
P12B_c4105
(thiE)
,
P12B_c4106
(thiC)
View Structure
7
4542745-4542941
(-)
lysine
4541303-4542653 (-)
lysC
P12B_c4130
Single gene
DOOR ID:
3753661
P12B_c4130
(lysC)
View Structure
8
4690722-4690768
(+)
mini-ykkC
4690785-4691103 (+)
sugE
P12B_c4247
Single gene
DOOR ID:
3753718
P12B_c4247
(sugE)
View Structure
9
4793235-4793350
(+)
Mg sensor
4793443-4796140 (+)
mgtA
P12B_c4348
Single gene
DOOR ID:
3753760
P12B_c4348
(mgtA)
View Structure
Genome:
Escherichia coli P12b
(
NC_017663.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"74038-74137";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"73023-73803";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"P12B_c0061";i:14;s:6:"Operon";i:15;s:7:"1282982";i:16;s:50:"P12B_c0061(tbpA);P12B_c0060(thiP);P12B_c0059(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"837011-837155";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"838153-838666";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:10:"P12B_c0772";i:14;s:6:"Operon";i:15;s:7:"1283122";i:16;s:84:"P12B_c0775(moaE);P12B_c0774(moaD);P12B_c0773(moaC);P12B_c0772(moaB);P12B_c0771(moaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2374136-2374232";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2373312-2374101";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:10:"P12B_c2202";i:14;s:6:"Operon";i:15;s:7:"1283390";i:16;s:67:"P12B_c2199(yegW);P12B_c2200(yegX);P12B_c2201(thiD);P12B_c2202(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3432604-3432752";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3431846-3432500";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:10:"P12B_c3140";i:14;s:11:"Single gene";i:15;s:7:"3753284";i:16;s:16:"P12B_c3140(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4473918-4474108";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4474172-4476017";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"P12B_c4087";i:14;s:6:"Operon";i:15;s:7:"1283780";i:16;s:33:"P12B_c4087(btuB);P12B_c4088(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4506462-4506562";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4504485-4506381";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:10:"P12B_c4106";i:14;s:6:"Operon";i:15;s:7:"1283784";i:16;s:84:"P12B_c4102(thiH);P12B_c4103(thiG);P12B_c4104(thiF);P12B_c4105(thiE);P12B_c4106(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4542745-4542941";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4541303-4542653";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:10:"P12B_c4130";i:14;s:11:"Single gene";i:15;s:7:"3753661";i:16;s:16:"P12B_c4130(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4690722-4690768";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4690785-4691103";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"P12B_c4247";i:14;s:11:"Single gene";i:15;s:7:"3753718";i:16;s:16:"P12B_c4247(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017663.1";i:2;s:22:"Escherichia coli P12b ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4793235-4793350";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4793443-4796140";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:10:"P12B_c4348";i:14;s:11:"Single gene";i:15;s:7:"3753760";i:16;s:16:"P12B_c4348(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}