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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77186-77285
(-)
TPP
76171-77155 (-)
tbpA
KO11_00330
Operon
DOOR ID:
1282055
KO11_00320
(thiQ)
,
KO11_00325
(thiP)
,
KO11_00330
(tbpA)
View Structure
2
334843-334889
(-)
mini-ykkC
334507-334825 (-)
sugE
KO11_01585
Single gene
DOOR ID:
3750298
KO11_01585
(sugE)
View Structure
3
479358-479554
(+)
lysine
479645-480995 (+)
lysC
KO11_02255
Single gene
DOOR ID:
3750367
KO11_02255
(lysC)
View Structure
4
518737-518837
(+)
TPP
518917-520813 (+)
thiC
KO11_02400
Operon
DOOR ID:
1282130
KO11_02400
(thiC)
,
KO11_02405
(thiE)
,
KO11_02410
(thiF)
,
KO11_02415
(thiS)
,
KO11_02420
(thiG)
,
KO11_02425
(thiH)
View Structure
5
550519-550709
(-)
cobalamin
548609-550454 (-)
btuB
KO11_02500
Operon
DOOR ID:
1282135
KO11_02495
(murI)
,
KO11_02500
(btuB)
View Structure
6
1593223-1593371
(+)
FMN
1593474-1594128 (+)
ribB
KO11_07500
Single gene
DOOR ID:
3750725
KO11_07500
(ribB)
View Structure
7
2602155-2602251
(+)
TPP
2602285-2603074 (+)
thiM
KO11_12100
Operon
DOOR ID:
1282536
KO11_12100
(thiM)
,
KO11_12105
(thiD)
,
KO11_12110
(yegX)
,
KO11_12115
(yegW)
View Structure
8
2903823-2903924
(-)
yybP-ykoY
2903125-2903692 (-)
KO11_13610
KO11_13610
Single gene
DOOR ID:
3751105
KO11_13610
View Structure
9
4200511-4200655
(-)
MOCO
4198999-4199512 (-)
moaB
KO11_19870
Operon
DOOR ID:
1282811
KO11_19855
(moaE)
,
KO11_19860
(moaD)
,
KO11_19865
(moaC)
,
KO11_19870
(moaB)
,
KO11_19875
(moaA)
View Structure
10
4845279-4845394
(+)
Mg sensor
4845487-4848184 (+)
mgtA
KO11_22845
Single gene
DOOR ID:
3751867
KO11_22845
(mgtA)
View Structure
Genome:
Escherichia coli KO11FL
(
NC_017660.1
);
Phylum:
Gammaproteobacteria
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