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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80286-80385
(-)
TPP
79271-80255 (-)
tbpA
ECO55CA74_00345
Operon
DOOR ID:
1079736
ECO55CA74_00335
(thiQ)
,
ECO55CA74_00340
(thiP)
,
ECO55CA74_00345
(tbpA)
View Structure
2
1029856-1030000
(+)
MOCO
1030998-1031511 (+)
ECO55CA74_04900
ECO55CA74_04900
Operon
DOOR ID:
1079909
ECO55CA74_04895
(moaA)
,
ECO55CA74_04900,
ECO55CA74_04905
(moaC)
,
ECO55CA74_04910
(moaD)
,
ECO55CA74_04915
(moaE)
View Structure
3
2257129-2257230
(+)
yybP-ykoY
2257242-2257365 (+)
ECO55CA74_10915
ECO55CA74_10915
Operon
DOOR ID:
1080115
ECO55CA74_10915,
ECO55CA74_10920
View Structure
4
2608417-2608513
(-)
TPP
2607593-2608382 (-)
ECO55CA74_12690
ECO55CA74_12690
Operon
DOOR ID:
1080191
ECO55CA74_12675,
ECO55CA74_12680,
ECO55CA74_12685,
ECO55CA74_12690
View Structure
5
3728901-3729049
(-)
FMN
3728143-3728797 (-)
ribB
ECO55CA74_17960
Single gene
DOOR ID:
3749463
ECO55CA74_17960
(ribB)
View Structure
6
4768620-4768810
(+)
cobalamin
4768874-4770719 (+)
btuB
ECO55CA74_22925
Operon
DOOR ID:
1080586
ECO55CA74_22925
(btuB)
,
ECO55CA74_22930
View Structure
7
4800974-4801074
(-)
TPP
4798997-4800893 (-)
ECO55CA74_23030
ECO55CA74_23030
Operon
DOOR ID:
1080591
ECO55CA74_23005
(thiH)
,
ECO55CA74_23010
(thiG)
,
ECO55CA74_23015,
ECO55CA74_23020,
ECO55CA74_23025,
ECO55CA74_23030
View Structure
8
4843801-4843997
(-)
lysine
4842359-4843709 (-)
ECO55CA74_23200
ECO55CA74_23200
Single gene
DOOR ID:
3749843
ECO55CA74_23200
View Structure
9
4987841-4987887
(+)
mini-ykkC
4987904-4988222 (+)
ECO55CA74_23870
ECO55CA74_23870
Single gene
DOOR ID:
3749908
ECO55CA74_23870
View Structure
10
5079683-5079798
(+)
Mg sensor
5079891-5082588 (+)
ECO55CA74_24320
ECO55CA74_24320
Single gene
DOOR ID:
3749952
ECO55CA74_24320
View Structure
Genome:
Escherichia coli O55:H7 str. RM12579
(
NC_017656.1
);
Phylum:
Gammaproteobacteria
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