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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78428-78527
(-)
TPP
77413-78409 (-)
tbpA
i14_0074
Operon
DOOR ID:
1078704
i14_0072
(thiQ)
,
i14_0073
(thiP)
,
i14_0074
(tbpA)
,
i14_0075,
i14_0076
(yabN)
View Structure
2
839648-839792
(+)
MOCO
840790-841303 (+)
moaB
i14_0829
Operon
DOOR ID:
1078850
i14_0828
(moaA)
,
i14_0829
(moaB)
View Structure
3
1999575-1999676
(+)
yybP-ykoY
1999752-2000373 (+)
yebN
i14_2046
Single gene
DOOR ID:
3747135
i14_2046
(yebN)
View Structure
4
2414052-2414148
(-)
TPP
2413228-2414017 (-)
thiM
i14_2431
Operon
DOOR ID:
1079154
i14_2428
(yegW)
,
i14_2429
(yegX)
,
i14_2430
(thiD)
,
i14_2431
(thiM)
View Structure
5
3501182-3501330
(-)
FMN
3500424-3501078 (-)
ribB
i14_3489
Single gene
DOOR ID:
3747576
i14_3489
(ribB)
View Structure
6
4517620-4517810
(+)
cobalamin
4517874-4519719 (+)
btuB
i14_4520
Operon
DOOR ID:
1079593
i14_4520
(btuB)
,
i14_4521
(murI)
View Structure
7
4549215-4549315
(-)
TPP
4547238-4549146 (-)
thiC
i14_4541
Operon
DOOR ID:
1079599
i14_4536
(thiH)
,
i14_4537
(thiG)
,
i14_4538
(thiS)
,
i14_4539
(thiF)
,
i14_4540
(thiE)
,
i14_4541
(thiC)
View Structure
8
4590823-4591019
(-)
lysine
4589381-4590731 (-)
lysC
i14_4579
Single gene
DOOR ID:
3747909
i14_4579
(lysC)
View Structure
9
4755187-4755233
(+)
mini-ykkC
4755564-4756098 (-)
blc
i14_4745
Operon
DOOR ID:
1079641
i14_4745
(blc)
,
i14_4746
(ampC)
,
i14_4747
(frdD)
,
i14_4748
(frdC)
,
i14_4749
(frdB)
,
i14_4750
(frdA)
View Structure
10
4854147-4854262
(+)
Mg sensor
4854355-4857052 (+)
mgtA
i14_4845
Operon
DOOR ID:
1079655
i14_4845
(mgtA)
,
i14_4846
View Structure
Genome:
Escherichia coli str. 'clone D i14'
(
NC_017652.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"78428-78527";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"77413-78409";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:8:"i14_0074";i:14;s:6:"Operon";i:15;s:7:"1078704";i:16;s:68:"i14_0072(thiQ);i14_0073(thiP);i14_0074(tbpA);i14_0075;i14_0076(yabN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"839648-839792";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"840790-841303";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:8:"i14_0829";i:14;s:6:"Operon";i:15;s:7:"1078850";i:16;s:29:"i14_0828(moaA);i14_0829(moaB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1999575-1999676";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1999752-2000373";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:8:"i14_2046";i:14;s:11:"Single gene";i:15;s:7:"3747135";i:16;s:14:"i14_2046(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2414052-2414148";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2413228-2414017";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:8:"i14_2431";i:14;s:6:"Operon";i:15;s:7:"1079154";i:16;s:59:"i14_2428(yegW);i14_2429(yegX);i14_2430(thiD);i14_2431(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3501182-3501330";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3500424-3501078";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:8:"i14_3489";i:14;s:11:"Single gene";i:15;s:7:"3747576";i:16;s:14:"i14_3489(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4517620-4517810";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4517874-4519719";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:8:"i14_4520";i:14;s:6:"Operon";i:15;s:7:"1079593";i:16;s:29:"i14_4520(btuB);i14_4521(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4549215-4549315";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4547238-4549146";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:8:"i14_4541";i:14;s:6:"Operon";i:15;s:7:"1079599";i:16;s:89:"i14_4536(thiH);i14_4537(thiG);i14_4538(thiS);i14_4539(thiF);i14_4540(thiE);i14_4541(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4590823-4591019";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4589381-4590731";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:8:"i14_4579";i:14;s:11:"Single gene";i:15;s:7:"3747909";i:16;s:14:"i14_4579(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4755187-4755233";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4755564-4756098";i:10;s:1:"-";i:11;s:3:"blc";i:12;s:0:"";i:13;s:8:"i14_4745";i:14;s:6:"Operon";i:15;s:7:"1079641";i:16;s:88:"i14_4745(blc);i14_4746(ampC);i14_4747(frdD);i14_4748(frdC);i14_4749(frdB);i14_4750(frdA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017652.1";i:2;s:36:"Escherichia coli str. 'clone D i14' ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4854147-4854262";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4854355-4857052";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:8:"i14_4845";i:14;s:6:"Operon";i:15;s:7:"1079655";i:16;s:23:"i14_4845(mgtA);i14_4846";i:17;s:0:"";i:18;s:15:"View Structure ";}}