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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
84520-84619
(-)
TPP
83505-84489 (-)
thiB
Thiamin transporter subunit
CE10_0071
Operon
DOOR ID:
1281057
CE10_0071
(thiB)
,
CE10_0070
(thiP)
,
CE10_0069
(thiQ)
View Structure
2
850284-850428
(+)
MOCO
851426-851939 (+)
moaB
Molybdenum cofactor biosynthesis protein B
CE10_0802
Operon
DOOR ID:
1281204
CE10_0801
(moaA)
,
CE10_0802
(moaB)
,
CE10_0803
(moaC)
,
CE10_0804
(moaD)
,
CE10_0805
(moaE)
View Structure
3
2124386-2124487
(+)
yybP-ykoY
2124617-2125184 (+)
yebN
Probable manganese efflux pump MntP
CE10_2104
Single gene
DOOR ID:
3743387
CE10_2104
(yebN)
View Structure
4
2448357-2448453
(-)
TPP
2447533-2448322 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CE10_2418
Operon
DOOR ID:
1281487
CE10_2415
(yegW)
,
CE10_2416
(yegX)
,
CE10_2417
(thiD)
,
CE10_2418
(thiM)
View Structure
5
3641013-3641161
(-)
FMN
3640255-3640909 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
CE10_3571
Single gene
DOOR ID:
3743852
CE10_3571
(ribB)
View Structure
6
4737650-4737840
(+)
cobalamin
4737904-4739749 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
CE10_4640
Operon
DOOR ID:
1281927
CE10_4640
(btuB)
,
CE10_4641
(murI)
View Structure
7
4775613-4775713
(-)
TPP
4773636-4775532 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CE10_4674
Operon
DOOR ID:
1281934
CE10_4669
(thiH)
,
CE10_4670
(thiG)
,
CE10_4671
(thiS)
,
CE10_4672
(thiF)
,
CE10_4673
(thiE)
,
CE10_4674
(thiC)
View Structure
8
4837215-4837411
(-)
lysine
4835773-4837123 (-)
lysC
Aspartokinase
CE10_4739
Single gene
DOOR ID:
3744238
CE10_4739
(lysC)
View Structure
9
4996084-4996130
(+)
mini-ykkC
4996147-4996465 (+)
sugE
CE10_4889
Single gene
DOOR ID:
3744309
CE10_4889
(sugE)
View Structure
10
5096022-5096137
(+)
Mg sensor
5096230-5098927 (+)
mgtA
Magnesium transporter
CE10_4989
Single gene
DOOR ID:
3744353
CE10_4989
(mgtA)
View Structure
Genome:
Escherichia coli O7:K1 str. CE10
(
NC_017646.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"84520-84619";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"83505-84489";i:10;s:1:"-";i:11;s:4:"thiB";i:12;s:27:"Thiamin transporter subunit";i:13;s:9:"CE10_0071";i:14;s:6:"Operon";i:15;s:7:"1281057";i:16;s:47:"CE10_0071(thiB);CE10_0070(thiP);CE10_0069(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"850284-850428";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"851426-851939";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"CE10_0802";i:14;s:6:"Operon";i:15;s:7:"1281204";i:16;s:79:"CE10_0801(moaA);CE10_0802(moaB);CE10_0803(moaC);CE10_0804(moaD);CE10_0805(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2124386-2124487";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2124617-2125184";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:9:"CE10_2104";i:14;s:11:"Single gene";i:15;s:7:"3743387";i:16;s:15:"CE10_2104(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2448357-2448453";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2447533-2448322";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"CE10_2418";i:14;s:6:"Operon";i:15;s:7:"1281487";i:16;s:63:"CE10_2415(yegW);CE10_2416(yegX);CE10_2417(thiD);CE10_2418(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3641013-3641161";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3640255-3640909";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"CE10_3571";i:14;s:11:"Single gene";i:15;s:7:"3743852";i:16;s:15:"CE10_3571(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4737650-4737840";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4737904-4739749";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"CE10_4640";i:14;s:6:"Operon";i:15;s:7:"1281927";i:16;s:31:"CE10_4640(btuB);CE10_4641(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4775613-4775713";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4773636-4775532";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"CE10_4674";i:14;s:6:"Operon";i:15;s:7:"1281934";i:16;s:95:"CE10_4669(thiH);CE10_4670(thiG);CE10_4671(thiS);CE10_4672(thiF);CE10_4673(thiE);CE10_4674(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4837215-4837411";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4835773-4837123";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"CE10_4739";i:14;s:11:"Single gene";i:15;s:7:"3744238";i:16;s:15:"CE10_4739(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4996084-4996130";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4996147-4996465";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"CE10_4889";i:14;s:11:"Single gene";i:15;s:7:"3744309";i:16;s:15:"CE10_4889(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017646.1";i:2;s:33:"Escherichia coli O7:K1 str. CE10 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5096022-5096137";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5096230-5098927";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:21:"Magnesium transporter";i:13;s:9:"CE10_4989";i:14;s:11:"Single gene";i:15;s:7:"3744353";i:16;s:15:"CE10_4989(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}