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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77186-77285
(-)
TPP
76171-77155 (-)
tbpA
Thiamin transporter subunit
ECW_m0066
Operon
DOOR ID:
1277301
ECW_m0066
(tbpA)
,
ECW_m0065
(thiP)
,
ECW_m0064
(thiQ)
View Structure
2
887178-887322
(+)
MOCO
888320-888833 (+)
moaB
Molybdenum cofactor biosynthesis protein B
ECW_m0838
Operon
DOOR ID:
1277450
ECW_m0837
(moaA)
,
ECW_m0838
(moaB)
,
ECW_m0839
(moaC)
,
ECW_m0840
(moaD)
,
ECW_m0841
(moaE)
View Structure
3
2053593-2053694
(+)
yybP-ykoY
2053824-2054391 (+)
yebN
Probable manganese efflux pump MntP
ECW_m1992
Single gene
DOOR ID:
3735784
ECW_m1992
(yebN)
View Structure
4
2353928-2354024
(-)
TPP
2353104-2353893 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECW_m2305
Operon
DOOR ID:
1277706
ECW_m2302
(yegW)
,
ECW_m2303
(yegX)
,
ECW_m2304
(thiD)
,
ECW_m2305
(thiM)
View Structure
5
3398639-3398787
(-)
FMN
3397881-3398535 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECW_m3307
Single gene
DOOR ID:
3736173
ECW_m3307
(ribB)
View Structure
6
4428032-4428222
(+)
cobalamin
4428286-4430131 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECW_m4324
Operon
DOOR ID:
1278102
ECW_m4324
(btuB)
,
ECW_m4325
(murI)
View Structure
7
4459905-4460005
(-)
TPP
4457928-4459824 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECW_m4352
Operon
DOOR ID:
1278107
ECW_m4347
(thiH)
,
ECW_m4348
(thiG)
,
ECW_m4349
(thiS)
,
ECW_m4350
(thiF)
,
ECW_m4351
(thiE)
,
ECW_m4352
(thiC)
View Structure
8
4499187-4499383
(-)
lysine
4497745-4499095 (-)
lysC
Aspartokinase
ECW_m4386
Single gene
DOOR ID:
3736517
ECW_m4386
(lysC)
View Structure
9
4634596-4634642
(+)
mini-ykkC
4634659-4634977 (+)
sugE
ECW_m4512
Single gene
DOOR ID:
3736578
ECW_m4512
(sugE)
View Structure
10
4725773-4725888
(+)
Mg sensor
4725981-4728678 (+)
mgtA
Magnesium transporter
ECW_m4604
Single gene
DOOR ID:
3736619
ECW_m4604
(mgtA)
View Structure
Genome:
Escherichia coli W
(
NC_017635.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3398639-3398787";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3397881-3398535";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"ECW_m3307";i:14;s:11:"Single gene";i:15;s:7:"3736173";i:16;s:15:"ECW_m3307(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4428032-4428222";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4428286-4430131";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"ECW_m4324";i:14;s:6:"Operon";i:15;s:7:"1278102";i:16;s:31:"ECW_m4324(btuB);ECW_m4325(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4459905-4460005";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4457928-4459824";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"ECW_m4352";i:14;s:6:"Operon";i:15;s:7:"1278107";i:16;s:95:"ECW_m4347(thiH);ECW_m4348(thiG);ECW_m4349(thiS);ECW_m4350(thiF);ECW_m4351(thiE);ECW_m4352(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4499187-4499383";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4497745-4499095";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"ECW_m4386";i:14;s:11:"Single gene";i:15;s:7:"3736517";i:16;s:15:"ECW_m4386(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4634596-4634642";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4634659-4634977";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ECW_m4512";i:14;s:11:"Single gene";i:15;s:7:"3736578";i:16;s:15:"ECW_m4512(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017635.1";i:2;s:19:"Escherichia coli W ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4725773-4725888";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4725981-4728678";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:21:"Magnesium transporter";i:13;s:9:"ECW_m4604";i:14;s:11:"Single gene";i:15;s:7:"3736619";i:16;s:15:"ECW_m4604(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
