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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78285-78384
(-)
TPP
77270-78254 (-)
tbpA
Thiamine transporter substrate binding subunit
NRG857_00360
Operon
DOOR ID:
1276409
NRG857_00360
(tbpA)
,
NRG857_00355
(thiP)
,
NRG857_00350
(thiQ)
View Structure
2
766246-766390
(+)
MOCO
767388-767901 (+)
NRG857_03485
Molybdenum cofactor biosynthesis protein B
NRG857_03485
Operon
DOOR ID:
1276539
NRG857_03500
(moaE)
,
NRG857_03495
(moaD)
,
NRG857_03490
(moaC)
,
NRG857_03485,
NRG857_03480
(moaA)
View Structure
3
1876487-1876588
(+)
yybP-ykoY
1876718-1877285 (+)
NRG857_09105
Probable manganese efflux pump MntP
NRG857_09105
Single gene
DOOR ID:
3734163
NRG857_09105
View Structure
4
2091166-2091341
(-)
cobalamin
2090510-2090948 (-)
NRG857_10135
NRG857_10135
Single gene
DOOR ID:
3734231
NRG857_10135
View Structure
5
2211068-2211164
(-)
TPP
2210244-2211033 (-)
NRG857_10680
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
NRG857_10680
Operon
DOOR ID:
1276802
NRG857_10680,
NRG857_10675
View Structure
6
3216508-3216656
(-)
FMN
3215750-3216404 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
NRG857_15175
Single gene
DOOR ID:
3734530
NRG857_15175
(ribB)
View Structure
7
4215753-4215943
(+)
cobalamin
4216007-4217852 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
NRG857_19835
Operon
DOOR ID:
1277183
NRG857_19835
(btuB)
,
NRG857_19840
View Structure
8
4247255-4247355
(-)
TPP
4245278-4247174 (-)
NRG857_19930
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
NRG857_19930
Operon
DOOR ID:
1277188
NRG857_19905
(thiH)
,
NRG857_19910
(thiG)
,
NRG857_19915,
NRG857_19920,
NRG857_19925,
NRG857_19930
View Structure
9
4288864-4289060
(-)
lysine
4287422-4288772 (-)
NRG857_20105
Aspartokinase
NRG857_20105
Single gene
DOOR ID:
3734837
NRG857_20105
View Structure
10
4491925-4491971
(+)
mini-ykkC
4491988-4492306 (+)
NRG857_21110
NRG857_21110
Single gene
DOOR ID:
3734899
NRG857_21110
View Structure
11
4590884-4590999
(+)
Mg sensor
4591092-4593789 (+)
NRG857_21580
Magnesium-transporting ATPase MgtA
NRG857_21580
Single gene
DOOR ID:
3734942
NRG857_21580
View Structure
Genome:
Escherichia coli O83:H1 str. NRG 857C
(
NC_017634.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"78285-78384";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"77270-78254";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:46:"Thiamine transporter substrate binding subunit";i:13;s:12:"NRG857_00360";i:14;s:6:"Operon";i:15;s:7:"1276409";i:16;s:56:"NRG857_00360(tbpA);NRG857_00355(thiP);NRG857_00350(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"766246-766390";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"767388-767901";i:10;s:1:"+";i:11;s:12:"NRG857_03485";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:12:"NRG857_03485";i:14;s:6:"Operon";i:15;s:7:"1276539";i:16;s:88:"NRG857_03500(moaE);NRG857_03495(moaD);NRG857_03490(moaC);NRG857_03485;NRG857_03480(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1876487-1876588";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1876718-1877285";i:10;s:1:"+";i:11;s:12:"NRG857_09105";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:12:"NRG857_09105";i:14;s:11:"Single gene";i:15;s:7:"3734163";i:16;s:12:"NRG857_09105";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2091166-2091341";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2090510-2090948";i:10;s:1:"-";i:11;s:12:"NRG857_10135";i:12;s:0:"";i:13;s:12:"NRG857_10135";i:14;s:11:"Single gene";i:15;s:7:"3734231";i:16;s:12:"NRG857_10135";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2211068-2211164";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2210244-2211033";i:10;s:1:"-";i:11;s:12:"NRG857_10680";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:12:"NRG857_10680";i:14;s:6:"Operon";i:15;s:7:"1276802";i:16;s:25:"NRG857_10680;NRG857_10675";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3216508-3216656";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3215750-3216404";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"NRG857_15175";i:14;s:11:"Single gene";i:15;s:7:"3734530";i:16;s:18:"NRG857_15175(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4215753-4215943";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4216007-4217852";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:12:"NRG857_19835";i:14;s:6:"Operon";i:15;s:7:"1277183";i:16;s:31:"NRG857_19835(btuB);NRG857_19840";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4247255-4247355";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4245278-4247174";i:10;s:1:"-";i:11;s:12:"NRG857_19930";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"NRG857_19930";i:14;s:6:"Operon";i:15;s:7:"1277188";i:16;s:89:"NRG857_19905(thiH);NRG857_19910(thiG);NRG857_19915;NRG857_19920;NRG857_19925;NRG857_19930";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4288864-4289060";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4287422-4288772";i:10;s:1:"-";i:11;s:12:"NRG857_20105";i:12;s:14:"Aspartokinase ";i:13;s:12:"NRG857_20105";i:14;s:11:"Single gene";i:15;s:7:"3734837";i:16;s:12:"NRG857_20105";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4491925-4491971";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4491988-4492306";i:10;s:1:"+";i:11;s:12:"NRG857_21110";i:12;s:0:"";i:13;s:12:"NRG857_21110";i:14;s:11:"Single gene";i:15;s:7:"3734899";i:16;s:12:"NRG857_21110";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017634.1";i:2;s:38:"Escherichia coli O83:H1 str. NRG 857C ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4590884-4590999";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4591092-4593789";i:10;s:1:"+";i:11;s:12:"NRG857_21580";i:12;s:35:"Magnesium-transporting ATPase MgtA ";i:13;s:12:"NRG857_21580";i:14;s:11:"Single gene";i:15;s:7:"3734942";i:16;s:12:"NRG857_21580";i:17;s:0:"";i:18;s:15:"View Structure ";}}