About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
222977-223125
(+)
FMN
223228-223882 (+)
ribB
UM146_01065
Single gene
DOOR ID:
3730029
UM146_01065
(ribB)
View Structure
2
1316213-1316309
(+)
TPP
1316343-1317132 (+)
UM146_06270
UM146_06270
Operon
DOOR ID:
1274741
UM146_06270,
UM146_06275,
UM146_06280,
UM146_06285
View Structure
3
1711037-1711138
(-)
yybP-ykoY
1710339-1710906 (-)
UM146_08065
UM146_08065
Single gene
DOOR ID:
3730456
UM146_08065
View Structure
4
2835577-2835721
(-)
MOCO
2834065-2834578 (-)
UM146_13735
UM146_13735
Operon
DOOR ID:
1275014
UM146_13720
(moaE)
,
UM146_13725
(moaD)
,
UM146_13730
(moaC)
,
UM146_13735,
UM146_13740
(moaA)
View Structure
5
3452115-3452215
(+)
TPP
3452295-3454191 (+)
UM146_16695
UM146_16695
Operon
DOOR ID:
1275130
UM146_16695,
UM146_16700,
UM146_16705,
UM146_16710,
UM146_16715
(thiG)
,
UM146_16720
(thiH)
View Structure
6
4194370-4194560
(+)
cobalamin
4194624-4196469 (+)
btuB
UM146_20105
Operon
DOOR ID:
1275270
UM146_20105
(btuB)
,
UM146_20110
View Structure
7
4227147-4227343
(-)
lysine
4225705-4227055 (-)
UM146_20235
UM146_20235
Single gene
DOOR ID:
3731363
UM146_20235
View Structure
8
4389882-4389928
(+)
mini-ykkC
4389945-4390263 (+)
UM146_20990
UM146_20990
Single gene
DOOR ID:
3731417
UM146_20990
View Structure
9
4488531-4488646
(+)
Mg sensor
4488739-4491436 (+)
UM146_21475
UM146_21475
Single gene
DOOR ID:
3731456
UM146_21475
View Structure
10
4839932-4840031
(-)
TPP
4838917-4839901 (-)
tbpA
UM146_23135
Operon
DOOR ID:
1275398
UM146_23125
(thiQ)
,
UM146_23130
(thiP)
,
UM146_23135
(tbpA)
View Structure
Genome:
Escherichia coli UM146
(
NC_017632.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"222977-223125";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"223228-223882";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:11:"UM146_01065";i:14;s:11:"Single gene";i:15;s:7:"3730029";i:16;s:17:"UM146_01065(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1316213-1316309";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1316343-1317132";i:10;s:1:"+";i:11;s:11:"UM146_06270";i:12;s:0:"";i:13;s:11:"UM146_06270";i:14;s:6:"Operon";i:15;s:7:"1274741";i:16;s:47:"UM146_06270;UM146_06275;UM146_06280;UM146_06285";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1711037-1711138";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1710339-1710906";i:10;s:1:"-";i:11;s:11:"UM146_08065";i:12;s:0:"";i:13;s:11:"UM146_08065";i:14;s:11:"Single gene";i:15;s:7:"3730456";i:16;s:11:"UM146_08065";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2835577-2835721";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2834065-2834578";i:10;s:1:"-";i:11;s:11:"UM146_13735";i:12;s:0:"";i:13;s:11:"UM146_13735";i:14;s:6:"Operon";i:15;s:7:"1275014";i:16;s:83:"UM146_13720(moaE);UM146_13725(moaD);UM146_13730(moaC);UM146_13735;UM146_13740(moaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3452115-3452215";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3452295-3454191";i:10;s:1:"+";i:11;s:11:"UM146_16695";i:12;s:0:"";i:13;s:11:"UM146_16695";i:14;s:6:"Operon";i:15;s:7:"1275130";i:16;s:83:"UM146_16695;UM146_16700;UM146_16705;UM146_16710;UM146_16715(thiG);UM146_16720(thiH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4194370-4194560";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4194624-4196469";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:11:"UM146_20105";i:14;s:6:"Operon";i:15;s:7:"1275270";i:16;s:29:"UM146_20105(btuB);UM146_20110";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4227147-4227343";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4225705-4227055";i:10;s:1:"-";i:11;s:11:"UM146_20235";i:12;s:0:"";i:13;s:11:"UM146_20235";i:14;s:11:"Single gene";i:15;s:7:"3731363";i:16;s:11:"UM146_20235";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4389882-4389928";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4389945-4390263";i:10;s:1:"+";i:11;s:11:"UM146_20990";i:12;s:0:"";i:13;s:11:"UM146_20990";i:14;s:11:"Single gene";i:15;s:7:"3731417";i:16;s:11:"UM146_20990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4488531-4488646";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4488739-4491436";i:10;s:1:"+";i:11;s:11:"UM146_21475";i:12;s:0:"";i:13;s:11:"UM146_21475";i:14;s:11:"Single gene";i:15;s:7:"3731456";i:16;s:11:"UM146_21475";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017632.1";i:2;s:23:"Escherichia coli UM146 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4839932-4840031";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4838917-4839901";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:11:"UM146_23135";i:14;s:6:"Operon";i:15;s:7:"1275398";i:16;s:53:"UM146_23125(thiQ);UM146_23130(thiP);UM146_23135(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}