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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79093-79192
(-)
TPP
78078-79062 (-)
thiB
ECOK1_0069
Operon
DOOR ID:
1074639
ECOK1_0067
(thiQ)
,
ECOK1_0068
(thiP)
,
ECOK1_0069
(thiB)
View Structure
2
816531-816675
(+)
MOCO
817673-818186 (+)
moaB
ECOK1_0784
Operon
DOOR ID:
1074773
ECOK1_0783
(moaA)
,
ECOK1_0784
(moaB)
,
ECOK1_0785
(moaC)
,
ECOK1_0786
(moaD)
,
ECOK1_0787
(moaE)
View Structure
3
1968389-1968490
(+)
yybP-ykoY
1968620-1969187 (+)
ECOK1_1939
ECOK1_1939
Single gene
DOOR ID:
3727041
ECOK1_1939
View Structure
4
2404266-2404362
(-)
TPP
2403442-2404231 (-)
thiM
ECOK1_2334
Operon
DOOR ID:
1075049
ECOK1_2330,
ECOK1_2332,
ECOK1_2333
(thiD)
,
ECOK1_2334
(thiM)
View Structure
5
3572377-3572525
(-)
FMN
3571619-3572273 (-)
ribB
ECOK1_3477
Single gene
DOOR ID:
3727483
ECOK1_3477
(ribB)
View Structure
6
4596716-4596816
(-)
TPP
4594739-4596635 (-)
thiC
ECOK1_4470
Operon
DOOR ID:
1075480
ECOK1_4465
(thiH)
,
ECOK1_4466
(thiG)
,
ECOK1_4467
(thiS)
,
ECOK1_4468
(thiF)
,
ECOK1_4469
(thiE)
,
ECOK1_4470
(thiC)
View Structure
7
4638157-4638353
(-)
lysine
4636715-4638065 (-)
lysC
ECOK1_4509
Single gene
DOOR ID:
3727810
ECOK1_4509
(lysC)
View Structure
8
4800883-4800929
(+)
mini-ykkC
4800946-4801264 (+)
sugE
ECOK1_4663
Single gene
DOOR ID:
3727869
ECOK1_4663
(sugE)
View Structure
9
4898757-4898872
(+)
Mg sensor
4898965-4901662 (+)
mgtA
ECOK1_4759
Single gene
DOOR ID:
3727909
ECOK1_4759
(mgtA)
View Structure
Genome:
Escherichia coli IHE3034
(
NC_017628.1
);
Phylum:
Gammaproteobacteria
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