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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
82417-82516
(-)
TPP
81402-82386 (-)
thiB
Thiamine ABC transport system; substrate-binding protein
EC042_0071
Operon
DOOR ID:
1272596
EC042_0071
(thiB)
,
EC042_0070
(thiP)
,
EC042_0069
(thiQ)
View Structure
2
927466-927610
(+)
MOCO
928608-929121 (+)
moaB
Molybdenum cofactor biosynthesis protein B
EC042_0865
Operon
DOOR ID:
1272759
EC042_0864
(moaA)
,
EC042_0865
(moaB)
,
EC042_0867
(moaC)
,
EC042_0868
(moaD)
,
EC042_0869
(moaE)
View Structure
3
2077479-2077580
(+)
yybP-ykoY
2077710-2078277 (+)
EC042_1986
Probable manganese efflux pump MntP
EC042_1986
Single gene
DOOR ID:
3725169
EC042_1986
View Structure
4
2446541-2446637
(-)
TPP
2445717-2446506 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EC042_2336
Operon
DOOR ID:
1273030
EC042_2333,
EC042_2334,
EC042_2335
(thiD)
,
EC042_2336
(thiM)
View Structure
5
3562206-3562354
(-)
FMN
3561448-3562102 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EC042_3339
Single gene
DOOR ID:
3725611
EC042_3339
(ribB)
View Structure
6
3872707-3872801
(-)
SAH
3871684-3872245 (-)
nudE
ADP compounds hydrolase
EC042_3658
Single gene
DOOR ID:
3725701
EC042_3658
(nudE)
View Structure
7
4638028-4638218
(+)
cobalamin
4638240-4640127 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EC042_4341
Operon
DOOR ID:
1273426
EC042_4341
(btuB)
,
EC042_4342
(murI)
View Structure
8
4670453-4670553
(-)
TPP
4668476-4670372 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EC042_4361
Operon
DOOR ID:
1273432
EC042_4359
(thiF)
,
EC042_4360
(thiE)
,
EC042_4361
(thiC)
View Structure
9
4713402-4713598
(-)
lysine
4711960-4713310 (-)
lysC
Aspartokinase
EC042_4393
Single gene
DOOR ID:
3725970
EC042_4393
(lysC)
View Structure
10
4962787-4962833
(+)
mini-ykkC
4962850-4963168 (+)
sugE
EC042_4624
Single gene
DOOR ID:
3726057
EC042_4624
(sugE)
View Structure
11
5057739-5057854
(+)
Mg sensor
5057947-5060644 (+)
mgtA
Mg(2+) transport ATPase; P-type
EC042_4720
Single gene
DOOR ID:
3726098
EC042_4720
(mgtA)
View Structure
Genome:
Escherichia coli 042
(
NC_017626.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"82417-82516";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"81402-82386";i:10;s:1:"-";i:11;s:4:"thiB";i:12;s:56:"Thiamine ABC transport system; substrate-binding protein";i:13;s:10:"EC042_0071";i:14;s:6:"Operon";i:15;s:7:"1272596";i:16;s:50:"EC042_0071(thiB);EC042_0070(thiP);EC042_0069(thiQ)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"927466-927610";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"928608-929121";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"EC042_0865";i:14;s:6:"Operon";i:15;s:7:"1272759";i:16;s:84:"EC042_0864(moaA);EC042_0865(moaB);EC042_0867(moaC);EC042_0868(moaD);EC042_0869(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2077479-2077580";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2077710-2078277";i:10;s:1:"+";i:11;s:10:"EC042_1986";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"EC042_1986";i:14;s:11:"Single gene";i:15;s:7:"3725169";i:16;s:10:"EC042_1986";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2446541-2446637";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2445717-2446506";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"EC042_2336";i:14;s:6:"Operon";i:15;s:7:"1273030";i:16;s:55:"EC042_2333;EC042_2334;EC042_2335(thiD);EC042_2336(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3562206-3562354";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3561448-3562102";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"EC042_3339";i:14;s:11:"Single gene";i:15;s:7:"3725611";i:16;s:16:"EC042_3339(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3872707-3872801";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3871684-3872245";i:10;s:1:"-";i:11;s:4:"nudE";i:12;s:24:"ADP compounds hydrolase ";i:13;s:10:"EC042_3658";i:14;s:11:"Single gene";i:15;s:7:"3725701";i:16;s:16:"EC042_3658(nudE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4638028-4638218";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4638240-4640127";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"EC042_4341";i:14;s:6:"Operon";i:15;s:7:"1273426";i:16;s:33:"EC042_4341(btuB);EC042_4342(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4670453-4670553";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4668476-4670372";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EC042_4361";i:14;s:6:"Operon";i:15;s:7:"1273432";i:16;s:50:"EC042_4359(thiF);EC042_4360(thiE);EC042_4361(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4713402-4713598";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4711960-4713310";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:10:"EC042_4393";i:14;s:11:"Single gene";i:15;s:7:"3725970";i:16;s:16:"EC042_4393(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4962787-4962833";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4962850-4963168";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"EC042_4624";i:14;s:11:"Single gene";i:15;s:7:"3726057";i:16;s:16:"EC042_4624(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017626.1";i:2;s:20:"Escherichia coli 042";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5057739-5057854";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5057947-5060644";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:10:"EC042_4720";i:14;s:11:"Single gene";i:15;s:7:"3726098";i:16;s:16:"EC042_4720(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}