About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
265356-265529
(-)
ykoK
263378-265034 (-)
SCATT_02170
Natural resistance-associated macrophage protein
SCATT_02170
Single gene
DOOR ID:
3711063
SCATT_02170
View Structure
2
404682-404848
(+)
ydaO-yuaA
405363-405825 (-)
SCATT_03580
Regulatory protein
SCATT_03580
Single gene
DOOR ID:
3711125
SCATT_03580
View Structure
3
788152-788256
(-)
glycine
785074-787960 (-)
SCATT_07130
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SCATT_07130
Single gene
DOOR ID:
3711258
SCATT_07130
View Structure
4
1131069-1131196
(+)
cobalamin
1131316-1132255 (+)
SCATT_10400
Cobalamin biosynthesis protein CobD
SCATT_10400
Operon
DOOR ID:
1271604
SCATT_10400,
SCATT_10410,
SCATT_10420,
SCATT_10430,
SCATT_10440,
SCATT_10450,
SCATT_10460,
SCATT_10470,
SCATT_10480,
SCATT_10490,
SCATT_10500
View Structure
5
1346823-1346935
(+)
TPP
1348145-1348364 (+)
SCATT_12290
SCATT_12290
Operon
DOOR ID:
1271641
SCATT_12280,
SCATT_12290,
SCATT_12300,
SCATT_12310,
SCATT_12320
View Structure
6
1382176-1382360
(-)
ydaO-yuaA
1381141-1382164 (-)
SCATT_12660
Secreted protein
SCATT_12660
Single gene
DOOR ID:
3711515
SCATT_12660
View Structure
7
1387224-1387340
(-)
SAM-IV
1385600-1387085 (-)
SCATT_12710
Putative aminotransferase
SCATT_12710
Single gene
DOOR ID:
3711518
SCATT_12710
View Structure
8
2039871-2039942
(-)
ykkC-III
2039515-2039866 (-)
SCATT_19210
SCATT_19210
single gene
DOOR ID:
3711799
SCATT_19210
View Structure
9
2243278-2243460
(-)
ydaO-yuaA
2242597-2243272 (-)
SCATT_20980
Transglycosylase domain protein
SCATT_20980
Single gene
DOOR ID:
3711891
SCATT_20980
View Structure
10
2588044-2588206
(-)
SAM
2586746-2588027 (-)
SCATT_24340
Threonine synthase
SCATT_24340
Operon
DOOR ID:
1271876
SCATT_24330,
SCATT_24340
View Structure
11
3351632-3351746
(+)
TPP
3353658-3353880 (+)
SCATT_31750
SCATT_31750
Operon
DOOR ID:
1272024
SCATT_31750,
SCATT_31770
View Structure
12
3581863-3582023
(+)
ydaO-yuaA
3582034-3582967 (+)
SCATT_33750
Putative peptidase
SCATT_33750
Single gene
DOOR ID:
3712416
SCATT_33750
View Structure
13
3962197-3962354
(-)
ydaO-yuaA
3961047-3962190 (-)
SCATT_36790
NLP/P60-family protein
SCATT_36790
Operon
DOOR ID:
1272122
SCATT_36790,
SCATT_36810
View Structure
14
4376840-4376969
(-)
cobalamin
4374331-4376698 (-)
SCATT_40770
Ribonucleoside-diphosphate reductase
SCATT_40770
Operon
DOOR ID:
1272200
SCATT_40760,
SCATT_40770
View Structure
15
4607513-4607611
(-)
glycine
4606195-4607392 (-)
SCATT_42890
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SCATT_42890
Operon
DOOR ID:
1272238
SCATT_42860,
SCATT_42870,
SCATT_42880,
SCATT_42890
View Structure
16
4777163-4777276
(+)
TPP
4777914-4779321 (+)
SCATT_44500
ABC transporter related protein
SCATT_44500
Operon
DOOR ID:
1272277
SCATT_44490,
SCATT_44500,
SCATT_44510,
SCATT_44520
View Structure
17
5497123-5497346
(-)
cobalamin
5495976-5497113 (-)
SCATT_50890
Nickel/cobalt efflux system
SCATT_50890
Operon
DOOR ID:
1272423
SCATT_50870,
SCATT_50880,
SCATT_50890
View Structure
18
5786312-5786442
(+)
FMN
5786595-5787717 (+)
SCATT_53690
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SCATT_53690
Operon
DOOR ID:
1272483
SCATT_53690,
SCATT_53700,
SCATT_53710,
SCATT_53720,
SCATT_53730,
SCATT_53740
View Structure
19
5985604-5985676
(-)
TPP
5984977-5985577 (+)
SCATT_55710
SCATT_55710
Operon
DOOR ID:
1272521
SCATT_55690,
SCATT_55700,
SCATT_55710
View Structure
Genome:
Streptomyces cattleya NRRL 8057 = DSM 46488
(
NC_017586.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"265356-265529";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"263378-265034";i:10;s:1:"-";i:11;s:11:"SCATT_02170";i:12;s:48:"Natural resistance-associated macrophage protein";i:13;s:11:"SCATT_02170";i:14;s:11:"Single gene";i:15;s:7:"3711063";i:16;s:11:"SCATT_02170";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"404682-404848";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"405363-405825";i:10;s:1:"-";i:11;s:11:"SCATT_03580";i:12;s:18:"Regulatory protein";i:13;s:11:"SCATT_03580";i:14;s:11:"Single gene";i:15;s:7:"3711125";i:16;s:11:"SCATT_03580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"788152-788256";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"785074-787960";i:10;s:1:"-";i:11;s:11:"SCATT_07130";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:11:"SCATT_07130";i:14;s:11:"Single gene";i:15;s:7:"3711258";i:16;s:11:"SCATT_07130";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1131069-1131196";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1131316-1132255";i:10;s:1:"+";i:11;s:11:"SCATT_10400";i:12;s:35:"Cobalamin biosynthesis protein CobD";i:13;s:11:"SCATT_10400";i:14;s:6:"Operon";i:15;s:7:"1271604";i:16;s:131:"SCATT_10400;SCATT_10410;SCATT_10420;SCATT_10430;SCATT_10440;SCATT_10450;SCATT_10460;SCATT_10470;SCATT_10480;SCATT_10490;SCATT_10500";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1346823-1346935";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1348145-1348364";i:10;s:1:"+";i:11;s:11:"SCATT_12290";i:12;s:0:"";i:13;s:11:"SCATT_12290";i:14;s:6:"Operon";i:15;s:7:"1271641";i:16;s:59:"SCATT_12280;SCATT_12290;SCATT_12300;SCATT_12310;SCATT_12320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1382176-1382360";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1381141-1382164";i:10;s:1:"-";i:11;s:11:"SCATT_12660";i:12;s:16:"Secreted protein";i:13;s:11:"SCATT_12660";i:14;s:11:"Single gene";i:15;s:7:"3711515";i:16;s:11:"SCATT_12660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1387224-1387340";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1385600-1387085";i:10;s:1:"-";i:11;s:11:"SCATT_12710";i:12;s:25:"Putative aminotransferase";i:13;s:11:"SCATT_12710";i:14;s:11:"Single gene";i:15;s:7:"3711518";i:16;s:11:"SCATT_12710";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2039871-2039942";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2039515-2039866";i:10;s:1:"-";i:11;s:11:"SCATT_19210";i:12;s:0:"";i:13;s:11:"SCATT_19210";i:14;s:11:"single gene";i:15;s:7:"3711799";i:16;s:11:"SCATT_19210";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2243278-2243460";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2242597-2243272";i:10;s:1:"-";i:11;s:11:"SCATT_20980";i:12;s:31:"Transglycosylase domain protein";i:13;s:11:"SCATT_20980";i:14;s:11:"Single gene";i:15;s:7:"3711891";i:16;s:11:"SCATT_20980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2588044-2588206";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2586746-2588027";i:10;s:1:"-";i:11;s:11:"SCATT_24340";i:12;s:18:"Threonine synthase";i:13;s:11:"SCATT_24340";i:14;s:6:"Operon";i:15;s:7:"1271876";i:16;s:23:"SCATT_24330;SCATT_24340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3351632-3351746";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3353658-3353880";i:10;s:1:"+";i:11;s:11:"SCATT_31750";i:12;s:0:"";i:13;s:11:"SCATT_31750";i:14;s:6:"Operon";i:15;s:7:"1272024";i:16;s:23:"SCATT_31750;SCATT_31770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3581863-3582023";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3582034-3582967";i:10;s:1:"+";i:11;s:11:"SCATT_33750";i:12;s:18:"Putative peptidase";i:13;s:11:"SCATT_33750";i:14;s:11:"Single gene";i:15;s:7:"3712416";i:16;s:11:"SCATT_33750";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3962197-3962354";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3961047-3962190";i:10;s:1:"-";i:11;s:11:"SCATT_36790";i:12;s:22:"NLP/P60-family protein";i:13;s:11:"SCATT_36790";i:14;s:6:"Operon";i:15;s:7:"1272122";i:16;s:23:"SCATT_36790;SCATT_36810";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4376840-4376969";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4374331-4376698";i:10;s:1:"-";i:11;s:11:"SCATT_40770";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:11:"SCATT_40770";i:14;s:6:"Operon";i:15;s:7:"1272200";i:16;s:23:"SCATT_40760;SCATT_40770";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4607513-4607611";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4606195-4607392";i:10;s:1:"-";i:11;s:11:"SCATT_42890";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"SCATT_42890";i:14;s:6:"Operon";i:15;s:7:"1272238";i:16;s:47:"SCATT_42860;SCATT_42870;SCATT_42880;SCATT_42890";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4777163-4777276";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4777914-4779321";i:10;s:1:"+";i:11;s:11:"SCATT_44500";i:12;s:31:"ABC transporter related protein";i:13;s:11:"SCATT_44500";i:14;s:6:"Operon";i:15;s:7:"1272277";i:16;s:47:"SCATT_44490;SCATT_44500;SCATT_44510;SCATT_44520";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5497123-5497346";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5495976-5497113";i:10;s:1:"-";i:11;s:11:"SCATT_50890";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:11:"SCATT_50890";i:14;s:6:"Operon";i:15;s:7:"1272423";i:16;s:35:"SCATT_50870;SCATT_50880;SCATT_50890";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5786312-5786442";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5786595-5787717";i:10;s:1:"+";i:11;s:11:"SCATT_53690";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:11:"SCATT_53690";i:14;s:6:"Operon";i:15;s:7:"1272483";i:16;s:71:"SCATT_53690;SCATT_53700;SCATT_53710;SCATT_53720;SCATT_53730;SCATT_53740";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017586.1";i:2;s:44:"Streptomyces cattleya NRRL 8057 = DSM 46488 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5985604-5985676";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5984977-5985577";i:10;s:1:"+";i:11;s:11:"SCATT_55710";i:12;s:0:"";i:13;s:11:"SCATT_55710";i:14;s:6:"Operon";i:15;s:7:"1272521";i:16;s:35:"SCATT_55690;SCATT_55700;SCATT_55710";i:17;s:0:"";i:18;s:15:"View Structure ";}}