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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
286671-286794
(-)
TPP
284612-286556 (-)
SerAS13_0245
SerAS13_0245
Operon
DOOR ID:
1065826
SerAS13_0240,
SerAS13_0241,
SerAS13_0242,
SerAS13_0243,
SerAS13_0244,
SerAS13_0245
View Structure
2
398976-399020
(+)
mini-ykkC
399039-399357 (+)
SerAS13_0354
SerAS13_0354
Single gene
DOOR ID:
3702366
SerAS13_0354
View Structure
3
752844-752969
(-)
TPP
751801-752788 (-)
SerAS13_0671
SerAS13_0671
Operon
DOOR ID:
1065910
SerAS13_0669,
SerAS13_0670,
SerAS13_0671
View Structure
4
1273531-1273593
(-)
fluoride
1273069-1273453 (-)
SerAS13_1163
SerAS13_1163
Operon
DOOR ID:
1066012
SerAS13_1160,
SerAS13_1161,
SerAS13_1162,
SerAS13_1163
View Structure
5
1408829-1408972
(+)
MOCO
1410028-1410541 (+)
SerAS13_1288
SerAS13_1288
Operon
DOOR ID:
1066037
SerAS13_1287,
SerAS13_1288,
SerAS13_1289,
SerAS13_1290,
SerAS13_1291
View Structure
6
1996570-1996603
(+)
SAM-SAH
1996610-1999973 (-)
SerAS13_1844
SerAS13_1844
Single gene
DOOR ID:
3702738
SerAS13_1844
View Structure
7
2724406-2724579
(-)
ykoK
2723310-2724333 (-)
SerAS13_2534
SerAS13_2534
Operon
DOOR ID:
1066310
SerAS13_2531,
SerAS13_2532,
SerAS13_2533,
SerAS13_2534
View Structure
8
3099388-3099575
(+)
yybP-ykoY
3099582-3100152 (+)
SerAS13_2915
SerAS13_2915
Single gene
DOOR ID:
3703036
SerAS13_2915
View Structure
9
3413115-3413217
(+)
TPP
3413279-3413960 (+)
SerAS13_3212
SerAS13_3212
Operon
DOOR ID:
1066442
SerAS13_3212,
SerAS13_3213,
SerAS13_3214,
SerAS13_3215
View Structure
10
4040649-4040740
(-)
TPP
4039817-4040612 (-)
SerAS13_3779
SerAS13_3779
Operon
DOOR ID:
1066559
SerAS13_3777,
SerAS13_3778,
SerAS13_3779
View Structure
11
4743875-4744036
(-)
FMN
4743108-4743762 (-)
SerAS13_4395
SerAS13_4395
Single gene
DOOR ID:
3703425
SerAS13_4395
View Structure
12
4950308-4950502
(+)
lysine
4950611-4951979 (+)
SerAS13_4582
SerAS13_4582
Operon
DOOR ID:
1066726
SerAS13_4582,
SerAS13_4583
View Structure
13
5266159-5266372
(-)
cobalamin
5264198-5266091 (-)
SerAS13_4865
SerAS13_4865
Operon
DOOR ID:
1066788
SerAS13_4864,
SerAS13_4865
View Structure
Genome:
Serratia sp. AS13
(
NC_017573.1
);
Phylum:
Gammaproteobacteria
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