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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
205458-205687
(-)
FMN
204611-205265 (-)
Sbal175_0174
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Sbal175_0174
Single gene
DOOR ID:
3700116
Sbal175_0174
View Structure
2
1031056-1031196
(+)
glycine
1031448-1032807 (+)
Sbal175_0860
Amino acid carrier protein
Sbal175_0860
Single gene
DOOR ID:
3700412
Sbal175_0860
View Structure
3
1211806-1211972
(+)
cobalamin
1212071-1212965 (+)
Sbal175_1006
Iron-chelate-transporting ATPase (4)
Sbal175_1006
Operon
DOOR ID:
1268520
Sbal175_1006,
Sbal175_1007
View Structure
4
1523461-1523549
(+)
c-di-GMP-I
1523663-1526270 (+)
Sbal175_1269
Glycoside hydrolase family 18
Sbal175_1269
single gene
DOOR ID:
3700626
Sbal175_1269
View Structure
5
1775010-1775206
(+)
lysine
1775294-1776854 (+)
Sbal175_1506
Na+/H+ antiporter NhaC-like protein
Sbal175_1506
Single gene
DOOR ID:
3700708
Sbal175_1506
View Structure
6
1803739-1803787
(+)
mini-ykkC
1803802-1804117 (+)
Sbal175_1526
Sbal175_1526
Single gene
DOOR ID:
3700720
Sbal175_1526
View Structure
7
2464934-2465032
(+)
TPP
2465233-2467357 (+)
Sbal175_2085
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Sbal175_2085
Operon
DOOR ID:
1268716
Sbal175_2085,
Sbal175_2086,
Sbal175_2087,
Sbal175_2088,
Sbal175_2089,
Sbal175_2090
View Structure
8
3008410-3008535
(-)
TPP
3006120-3008355 (-)
Sbal175_2543
TonB-dependent receptor
Sbal175_2543
Single gene
DOOR ID:
3701188
Sbal175_2543
View Structure
9
3998589-3998688
(-)
c-di-GMP-I
3997020-3998466 (-)
Sbal175_3371
GlcNAc-binding protein A
Sbal175_3371
single gene
DOOR ID:
3701620
Sbal175_3371
View Structure
10
3998913-3999016
(+)
yybP-ykoY
3999099-3999654 (+)
Sbal175_3372
Sbal175_3372
Single gene
DOOR ID:
3701621
Sbal175_3372
View Structure
11
4215250-4215484
(-)
cobalamin
4213182-4215141 (-)
Sbal175_3559
TonB-dependent receptor plug
Sbal175_3559
Single gene
DOOR ID:
3701740
Sbal175_3559
View Structure
12
4300529-4300703
(-)
lysine
4299022-4300378 (-)
Sbal175_3638
Aspartokinase
Sbal175_3638
Operon
DOOR ID:
1268975
Sbal175_3637,
Sbal175_3638
View Structure
13
4679190-4679323
(-)
MOCO
4677648-4678125 (-)
Sbal175_3966
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sbal175_3966
Operon
DOOR ID:
1269026
Sbal175_3966,
Sbal175_3967
View Structure
Genome:
Shewanella baltica BA175
(
NC_017571.1
);
Phylum:
Gammaproteobacteria
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chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1775010-1775206";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1775294-1776854";i:10;s:1:"+";i:11;s:12:"Sbal175_1506";i:12;s:35:"Na+/H+ antiporter NhaC-like protein";i:13;s:12:"Sbal175_1506";i:14;s:11:"Single gene";i:15;s:7:"3700708";i:16;s:12:"Sbal175_1506";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1803739-1803787";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1803802-1804117";i:10;s:1:"+";i:11;s:12:"Sbal175_1526";i:12;s:0:"";i:13;s:12:"Sbal175_1526";i:14;s:11:"Single gene";i:15;s:7:"3700720";i:16;s:12:"Sbal175_1526";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2464934-2465032";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2465233-2467357";i:10;s:1:"+";i:11;s:12:"Sbal175_2085";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"Sbal175_2085";i:14;s:6:"Operon";i:15;s:7:"1268716";i:16;s:77:"Sbal175_2085;Sbal175_2086;Sbal175_2087;Sbal175_2088;Sbal175_2089;Sbal175_2090";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3008410-3008535";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3006120-3008355";i:10;s:1:"-";i:11;s:12:"Sbal175_2543";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Sbal175_2543";i:14;s:11:"Single gene";i:15;s:7:"3701188";i:16;s:12:"Sbal175_2543";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3998589-3998688";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3997020-3998466";i:10;s:1:"-";i:11;s:12:"Sbal175_3371";i:12;s:24:"GlcNAc-binding protein A";i:13;s:12:"Sbal175_3371";i:14;s:11:"single gene";i:15;s:7:"3701620";i:16;s:12:"Sbal175_3371";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3998913-3999016";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3999099-3999654";i:10;s:1:"+";i:11;s:12:"Sbal175_3372";i:12;s:0:"";i:13;s:12:"Sbal175_3372";i:14;s:11:"Single gene";i:15;s:7:"3701621";i:16;s:12:"Sbal175_3372";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4215250-4215484";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4213182-4215141";i:10;s:1:"-";i:11;s:12:"Sbal175_3559";i:12;s:28:"TonB-dependent receptor plug";i:13;s:12:"Sbal175_3559";i:14;s:11:"Single gene";i:15;s:7:"3701740";i:16;s:12:"Sbal175_3559";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4300529-4300703";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4299022-4300378";i:10;s:1:"-";i:11;s:12:"Sbal175_3638";i:12;s:14:"Aspartokinase ";i:13;s:12:"Sbal175_3638";i:14;s:6:"Operon";i:15;s:7:"1268975";i:16;s:25:"Sbal175_3637;Sbal175_3638";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017571.1";i:2;s:25:"Shewanella baltica BA175 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4679190-4679323";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"4677648-4678125";i:10;s:1:"-";i:11;s:12:"Sbal175_3966";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:12:"Sbal175_3966";i:14;s:6:"Operon";i:15;s:7:"1269026";i:16;s:25:"Sbal175_3966;Sbal175_3967";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
