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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
248769-248837
(-)
cobalamin
248342-248582 (-)
TIIST44_01140
TIIST44_01140
Operon
DOOR ID:
1061692
TIIST44_01130,
TIIST44_01135,
TIIST44_01140
View Structure
2
341947-342081
(-)
FMN
340876-341872 (-)
TIIST44_01580
TIIST44_01580
Operon
DOOR ID:
1061714
TIIST44_01555
(purH)
,
TIIST44_01560
(purN)
,
TIIST44_01565
(ribH)
,
TIIST44_01570,
TIIST44_01575,
TIIST44_01580
View Structure
3
588781-588849
(+)
cobalamin
589035-589275 (+)
TIIST44_02695
TIIST44_02695
Operon
DOOR ID:
1061757
TIIST44_02695,
TIIST44_02700,
TIIST44_02705
View Structure
4
711233-711433
(+)
cobalamin
711544-714115 (+)
TIIST44_03320
TIIST44_03320
Operon
DOOR ID:
1061784
TIIST44_03320,
TIIST44_03325
(nrdF)
View Structure
5
734157-734397
(-)
cobalamin
731738-734081 (-)
TIIST44_03420
TIIST44_03420
Operon
DOOR ID:
1061788
TIIST44_03415,
TIIST44_03420
View Structure
6
1017295-1017361
(+)
ykkC-III
1018599-1020168 (-)
TIIST44_04730
TIIST44_04730
single gene
DOOR ID:
3687249
TIIST44_04730
View Structure
7
1128926-1129020
(+)
TPP
1130757-1130934 (+)
TIIST44_05200
TIIST44_05200
Operon
DOOR ID:
1061861
TIIST44_05200,
TIIST44_05205
(thiE)
View Structure
8
1183920-1184023
(+)
TPP
1184057-1184687 (+)
TIIST44_05435
TIIST44_05435
Operon
DOOR ID:
1061874
TIIST44_05435,
TIIST44_05440
View Structure
9
1382382-1382567
(-)
cobalamin
1381320-1382346 (-)
TIIST44_06390
TIIST44_06390
Operon
DOOR ID:
1061911
TIIST44_06380,
TIIST44_06385,
TIIST44_06390
View Structure
10
1466941-1467119
(+)
cobalamin
1467206-1468226 (+)
TIIST44_06870
TIIST44_06870
Operon
DOOR ID:
1061930
TIIST44_06865,
TIIST44_06870,
TIIST44_06875,
TIIST44_06880
View Structure
11
1476132-1476246
(+)
cobalamin
1476288-1476903 (+)
TIIST44_06925
TIIST44_06925
Operon
DOOR ID:
1061932
TIIST44_06925,
TIIST44_06930,
TIIST44_06935
View Structure
12
1480930-1480991
(+)
cobalamin
1481107-1482778 (+)
TIIST44_06945
TIIST44_06945
Operon
DOOR ID:
1061933
TIIST44_06945,
TIIST44_06950,
TIIST44_06955
View Structure
13
1570023-1570132
(-)
TPP
1568507-1568774 (-)
TIIST44_07375
TIIST44_07375
Operon
DOOR ID:
1061949
TIIST44_07365,
TIIST44_07370
(thiG)
,
TIIST44_07375,
TIIST44_07380
View Structure
14
2168546-2168659
(-)
TPP
2167106-2167757 (-)
TIIST44_10220
TIIST44_10220
Operon
DOOR ID:
1062062
TIIST44_10220,
TIIST44_10225
View Structure
15
2231336-2231412
(-)
cobalamin
2229720-2230893 (-)
TIIST44_10510
TIIST44_10510
Single gene
DOOR ID:
3687645
TIIST44_10510
View Structure
16
2382944-2383130
(-)
cobalamin
2381889-2382903 (-)
TIIST44_11205
TIIST44_11205
Operon
DOOR ID:
1062102
TIIST44_11190,
TIIST44_11195,
TIIST44_11200,
TIIST44_11205
View Structure
17
2442826-2443078
(-)
cobalamin
2440835-2442746 (-)
TIIST44_11480
TIIST44_11480
Operon
DOOR ID:
1062114
TIIST44_11475,
TIIST44_11480
View Structure
Genome:
Propionibacterium acnes ATCC 11828
(
NC_017550.1
);
Phylum:
Actinobacteria
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"248769-248837";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"248342-248582";i:10;s:1:"-";i:11;s:13:"TIIST44_01140";i:12;s:0:"";i:13;s:13:"TIIST44_01140";i:14;s:6:"Operon";i:15;s:7:"1061692";i:16;s:41:"TIIST44_01130;TIIST44_01135;TIIST44_01140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"341947-342081";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"340876-341872";i:10;s:1:"-";i:11;s:13:"TIIST44_01580";i:12;s:0:"";i:13;s:13:"TIIST44_01580";i:14;s:6:"Operon";i:15;s:7:"1061714";i:16;s:101:"TIIST44_01555(purH);TIIST44_01560(purN);TIIST44_01565(ribH);TIIST44_01570;TIIST44_01575;TIIST44_01580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"588781-588849";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"589035-589275";i:10;s:1:"+";i:11;s:13:"TIIST44_02695";i:12;s:0:"";i:13;s:13:"TIIST44_02695";i:14;s:6:"Operon";i:15;s:7:"1061757";i:16;s:41:"TIIST44_02695;TIIST44_02700;TIIST44_02705";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"711233-711433";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"711544-714115";i:10;s:1:"+";i:11;s:13:"TIIST44_03320";i:12;s:0:"";i:13;s:13:"TIIST44_03320";i:14;s:6:"Operon";i:15;s:7:"1061784";i:16;s:33:"TIIST44_03320;TIIST44_03325(nrdF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"734157-734397";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"731738-734081";i:10;s:1:"-";i:11;s:13:"TIIST44_03420";i:12;s:0:"";i:13;s:13:"TIIST44_03420";i:14;s:6:"Operon";i:15;s:7:"1061788";i:16;s:27:"TIIST44_03415;TIIST44_03420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1017295-1017361";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1018599-1020168";i:10;s:1:"-";i:11;s:13:"TIIST44_04730";i:12;s:0:"";i:13;s:13:"TIIST44_04730";i:14;s:11:"single gene";i:15;s:7:"3687249";i:16;s:13:"TIIST44_04730";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1128926-1129020";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1130757-1130934";i:10;s:1:"+";i:11;s:13:"TIIST44_05200";i:12;s:0:"";i:13;s:13:"TIIST44_05200";i:14;s:6:"Operon";i:15;s:7:"1061861";i:16;s:33:"TIIST44_05200;TIIST44_05205(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1183920-1184023";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1184057-1184687";i:10;s:1:"+";i:11;s:13:"TIIST44_05435";i:12;s:0:"";i:13;s:13:"TIIST44_05435";i:14;s:6:"Operon";i:15;s:7:"1061874";i:16;s:27:"TIIST44_05435;TIIST44_05440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1382382-1382567";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1381320-1382346";i:10;s:1:"-";i:11;s:13:"TIIST44_06390";i:12;s:0:"";i:13;s:13:"TIIST44_06390";i:14;s:6:"Operon";i:15;s:7:"1061911";i:16;s:41:"TIIST44_06380;TIIST44_06385;TIIST44_06390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1466941-1467119";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1467206-1468226";i:10;s:1:"+";i:11;s:13:"TIIST44_06870";i:12;s:0:"";i:13;s:13:"TIIST44_06870";i:14;s:6:"Operon";i:15;s:7:"1061930";i:16;s:55:"TIIST44_06865;TIIST44_06870;TIIST44_06875;TIIST44_06880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1476132-1476246";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1476288-1476903";i:10;s:1:"+";i:11;s:13:"TIIST44_06925";i:12;s:0:"";i:13;s:13:"TIIST44_06925";i:14;s:6:"Operon";i:15;s:7:"1061932";i:16;s:41:"TIIST44_06925;TIIST44_06930;TIIST44_06935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1480930-1480991";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1481107-1482778";i:10;s:1:"+";i:11;s:13:"TIIST44_06945";i:12;s:0:"";i:13;s:13:"TIIST44_06945";i:14;s:6:"Operon";i:15;s:7:"1061933";i:16;s:41:"TIIST44_06945;TIIST44_06950;TIIST44_06955";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1570023-1570132";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1568507-1568774";i:10;s:1:"-";i:11;s:13:"TIIST44_07375";i:12;s:0:"";i:13;s:13:"TIIST44_07375";i:14;s:6:"Operon";i:15;s:7:"1061949";i:16;s:61:"TIIST44_07365;TIIST44_07370(thiG);TIIST44_07375;TIIST44_07380";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2168546-2168659";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2167106-2167757";i:10;s:1:"-";i:11;s:13:"TIIST44_10220";i:12;s:0:"";i:13;s:13:"TIIST44_10220";i:14;s:6:"Operon";i:15;s:7:"1062062";i:16;s:27:"TIIST44_10220;TIIST44_10225";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2231336-2231412";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2229720-2230893";i:10;s:1:"-";i:11;s:13:"TIIST44_10510";i:12;s:0:"";i:13;s:13:"TIIST44_10510";i:14;s:11:"Single gene";i:15;s:7:"3687645";i:16;s:13:"TIIST44_10510";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2382944-2383130";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2381889-2382903";i:10;s:1:"-";i:11;s:13:"TIIST44_11205";i:12;s:0:"";i:13;s:13:"TIIST44_11205";i:14;s:6:"Operon";i:15;s:7:"1062102";i:16;s:55:"TIIST44_11190;TIIST44_11195;TIIST44_11200;TIIST44_11205";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017550.1";i:2;s:35:"Propionibacterium acnes ATCC 11828 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2442826-2443078";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2440835-2442746";i:10;s:1:"-";i:11;s:13:"TIIST44_11480";i:12;s:0:"";i:13;s:13:"TIIST44_11480";i:14;s:6:"Operon";i:15;s:7:"1062114";i:16;s:27:"TIIST44_11475;TIIST44_11480";i:17;s:0:"";i:18;s:15:"View Structure ";}}