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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
612338-612474
(+)
TPP
612563-614447 (+)
thiC
NCGM2_0546
Single gene
DOOR ID:
3684657
NCGM2_0546
(thiC)
View Structure
2
1047102-1047225
(-)
yybP-ykoY
1046432-1047011 (-)
NCGM2_0960
NCGM2_0960
Single gene
DOOR ID:
3684811
NCGM2_0960
View Structure
3
1329408-1329470
(+)
fluoride
1329534-1329918 (+)
crcB
NCGM2_1220
Single gene
DOOR ID:
3684901
NCGM2_1220
(crcB)
View Structure
4
2321775-2321983
(+)
cobalamin
2322078-2323917 (+)
btuB
NCGM2_2155
Operon
DOOR ID:
1265871
NCGM2_2165
(cobS)
,
NCGM2_2164
(cobC)
,
NCGM2_2163
(cobT)
,
NCGM2_2162
(cobU)
,
NCGM2_2161
(cobQ)
,
NCGM2_2160
(cobC)
,
NCGM2_2159
(cobD)
,
NCGM2_2158,
NCGM2_2157
(cobB)
,
NCGM2_2156
(cobO)
,
NCGM2_2155
(btuB)
View Structure
5
2985127-2985175
(+)
mini-ykkC
2985189-2985513 (+)
sugE
NCGM2_2800
Operon
DOOR ID:
1266002
NCGM2_2801
(nuoA)
,
NCGM2_2800
(sugE)
View Structure
6
4339504-4339755
(-)
cobalamin
4338043-4339414 (-)
NCGM2_4016
NCGM2_4016
Operon
DOOR ID:
1266243
NCGM2_4016,
NCGM2_4015,
NCGM2_4014
(cobJ)
View Structure
7
4343539-4343704
(-)
yybP-ykoY
4342959-4343529 (-)
yebN
NCGM2_4020
Single gene
DOOR ID:
3685962
NCGM2_4020
(yebN)
View Structure
8
4343862-4344067
(+)
cobalamin
4344165-4346322 (+)
NCGM2_4021
NCGM2_4021
Operon
DOOR ID:
1266245
NCGM2_4024
(btuC)
,
NCGM2_4023,
NCGM2_4022,
NCGM2_4021
View Structure
9
4383919-4384110
(-)
cobalamin
4382745-4383798 (-)
cobW
NCGM2_4057
Operon
DOOR ID:
1266251
NCGM2_4057
(cobW)
,
NCGM2_4056
(cobN)
View Structure
10
4384169-4384319
(+)
cobalamin
4384620-4385322 (+)
NCGM2_4058
NCGM2_4058
Single gene
DOOR ID:
3685982
NCGM2_4058
View Structure
11
4727851-4727907
(+)
mini-ykkC
4727931-4728246 (+)
sugE
NCGM2_4391
Single gene
DOOR ID:
3686099
NCGM2_4391
(sugE)
View Structure
12
5632963-5633125
(-)
FMN
5632119-5632779 (-)
ribC
NCGM2_5255
Operon
DOOR ID:
1266482
NCGM2_5248,
NCGM2_5249,
NCGM2_5250
(pgpA)
,
NCGM2_5251
(thiL)
,
NCGM2_5252
(nusB)
,
NCGM2_5253
(ribH)
,
NCGM2_5254
(ribB)
,
NCGM2_5255
(ribC)
View Structure
13
6146409-6146514
(+)
SAH
6146548-6147946 (+)
sahH
NCGM2_5765
Operon
DOOR ID:
1266591
NCGM2_5765
(sahH)
,
NCGM2_5766,
NCGM2_5767
(metF)
View Structure
Genome:
Pseudomonas aeruginosa NCGM2.S1
(
NC_017549.1
);
Phylum:
Gammaproteobacteria
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";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1047102-1047225";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1046432-1047011";i:10;s:1:"-";i:11;s:10:"NCGM2_0960";i:12;s:0:"";i:13;s:10:"NCGM2_0960";i:14;s:11:"Single gene";i:15;s:7:"3684811";i:16;s:10:"NCGM2_0960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1329408-1329470";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1329534-1329918";i:10;s:1:"+";i:11;s:4:"crcB";i:12;s:0:"";i:13;s:10:"NCGM2_1220";i:14;s:11:"Single gene";i:15;s:7:"3684901";i:16;s:16:"NCGM2_1220(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2321775-2321983";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2322078-2323917";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"NCGM2_2155";i:14;s:6:"Operon";i:15;s:7:"1265871";i:16;s:180:"NCGM2_2165(cobS);NCGM2_2164(cobC);NCGM2_2163(cobT);NCGM2_2162(cobU);NCGM2_2161(cobQ);NCGM2_2160(cobC);NCGM2_2159(cobD);NCGM2_2158;NCGM2_2157(cobB);NCGM2_2156(cobO);NCGM2_2155(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2985127-2985175";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2985189-2985513";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"NCGM2_2800";i:14;s:6:"Operon";i:15;s:7:"1266002";i:16;s:33:"NCGM2_2801(nuoA);NCGM2_2800(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4339504-4339755";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4338043-4339414";i:10;s:1:"-";i:11;s:10:"NCGM2_4016";i:12;s:0:"";i:13;s:10:"NCGM2_4016";i:14;s:6:"Operon";i:15;s:7:"1266243";i:16;s:38:"NCGM2_4016;NCGM2_4015;NCGM2_4014(cobJ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4343539-4343704";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4342959-4343529";i:10;s:1:"-";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:10:"NCGM2_4020";i:14;s:11:"Single gene";i:15;s:7:"3685962";i:16;s:16:"NCGM2_4020(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4343862-4344067";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4344165-4346322";i:10;s:1:"+";i:11;s:10:"NCGM2_4021";i:12;s:0:"";i:13;s:10:"NCGM2_4021";i:14;s:6:"Operon";i:15;s:7:"1266245";i:16;s:49:"NCGM2_4024(btuC);NCGM2_4023;NCGM2_4022;NCGM2_4021";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4383919-4384110";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4382745-4383798";i:10;s:1:"-";i:11;s:4:"cobW";i:12;s:0:"";i:13;s:10:"NCGM2_4057";i:14;s:6:"Operon";i:15;s:7:"1266251";i:16;s:33:"NCGM2_4057(cobW);NCGM2_4056(cobN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4384169-4384319";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4384620-4385322";i:10;s:1:"+";i:11;s:10:"NCGM2_4058";i:12;s:0:"";i:13;s:10:"NCGM2_4058";i:14;s:11:"Single gene";i:15;s:7:"3685982";i:16;s:10:"NCGM2_4058";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4727851-4727907";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4727931-4728246";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"NCGM2_4391";i:14;s:11:"Single gene";i:15;s:7:"3686099";i:16;s:16:"NCGM2_4391(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5632963-5633125";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5632119-5632779";i:10;s:1:"-";i:11;s:4:"ribC";i:12;s:0:"";i:13;s:10:"NCGM2_5255";i:14;s:6:"Operon";i:15;s:7:"1266482";i:16;s:123:"NCGM2_5248;NCGM2_5249;NCGM2_5250(pgpA);NCGM2_5251(thiL);NCGM2_5252(nusB);NCGM2_5253(ribH);NCGM2_5254(ribB);NCGM2_5255(ribC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017549.1";i:2;s:32:"Pseudomonas aeruginosa NCGM2.S1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6146409-6146514";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6146548-6147946";i:10;s:1:"+";i:11;s:4:"sahH";i:12;s:0:"";i:13;s:10:"NCGM2_5765";i:14;s:6:"Operon";i:15;s:7:"1266591";i:16;s:44:"NCGM2_5765(sahH);NCGM2_5766;NCGM2_5767(metF)";i:17;s:0:"";i:18;s:15:"View Structure ";}}