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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
477662-477767
(-)
SAH
476229-477639 (-)
sahH
PAM18_0432
Operon
DOOR ID:
1264358
PAM18_0432
(sahH)
,
PAM18_0431,
PAM18_0430
(metF)
View Structure
2
972446-972608
(+)
FMN
972791-973451 (+)
ribC
PAM18_0885
Operon
DOOR ID:
1264459
PAM18_0892,
PAM18_0891,
PAM18_0890
(pgpA)
,
PAM18_0889
(thiL)
,
PAM18_0888
(nusB)
,
PAM18_0887
(ribH)
,
PAM18_0886
(ribB)
,
PAM18_0885
(ribC)
View Structure
3
1874801-1874857
(-)
mini-ykkC
1874461-1874776 (-)
PAM18_1704
PAM18_1704
Single gene
DOOR ID:
3682861
PAM18_1704
View Structure
4
2212173-2212323
(-)
cobalamin
2211888-2212071 (-)
cbtB
PAM18_2016
Operon
DOOR ID:
1264682
PAM18_2016
(cbtB)
,
PAM18_2015
View Structure
5
2212382-2212573
(+)
cobalamin
2212693-2213746 (+)
PAM18_2017
PAM18_2017
Operon
DOOR ID:
1264683
PAM18_2018
(cobN)
,
PAM18_2017
View Structure
6
2252360-2252565
(-)
cobalamin
2250104-2252261 (-)
PAM18_2051
PAM18_2051
Operon
DOOR ID:
1264689
PAM18_2051,
PAM18_2050,
PAM18_2049,
PAM18_2048
View Structure
7
2252723-2252888
(+)
yybP-ykoY
2252897-2253467 (+)
PAM18_2052
PAM18_2052
Single gene
DOOR ID:
3682986
PAM18_2052
View Structure
8
2256673-2256924
(+)
cobalamin
2257013-2258384 (+)
PAM18_2056
PAM18_2056
Operon
DOOR ID:
1264691
PAM18_2059
(cobJ)
,
PAM18_2058
(cobI)
,
PAM18_2057
(cobH)
,
PAM18_2056
View Structure
9
3527319-3527367
(-)
mini-ykkC
3526980-3527304 (-)
PAM18_3159
PAM18_3159
Operon
DOOR ID:
1264906
PAM18_3158,
PAM18_3159
View Structure
10
4172801-4173009
(-)
cobalamin
4170866-4172705 (-)
PAM18_3758
PAM18_3758
Operon
DOOR ID:
1265030
PAM18_3748
(cobS)
,
PAM18_3749,
PAM18_3750
(cobT)
,
PAM18_3751
(cobU)
,
PAM18_3752
(cobQ)
,
PAM18_3753
(cobC)
,
PAM18_3754
(cobD)
,
PAM18_3755,
PAM18_3756
(cobB)
,
PAM18_3757
(cobO)
,
PAM18_3758
View Structure
11
4954209-4954271
(-)
fluoride
4953760-4954144 (-)
PAM18_4474
PAM18_4474
Single gene
DOOR ID:
3683951
PAM18_4474
View Structure
12
5236906-5237029
(+)
yybP-ykoY
5237119-5237698 (+)
PAM18_4724
PAM18_4724
Single gene
DOOR ID:
3684039
PAM18_4724
View Structure
13
5634850-5634986
(-)
TPP
5632876-5634760 (-)
thiC
PAM18_5084
Single gene
DOOR ID:
3684166
PAM18_5084
(thiC)
View Structure
Genome:
Pseudomonas aeruginosa M18
(
NC_017548.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"477662-477767";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"476229-477639";i:10;s:1:"-";i:11;s:4:"sahH";i:12;s:0:"";i:13;s:10:"PAM18_0432";i:14;s:6:"Operon";i:15;s:7:"1264358";i:16;s:44:"PAM18_0432(sahH);PAM18_0431;PAM18_0430(metF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"972446-972608";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"972791-973451";i:10;s:1:"+";i:11;s:4:"ribC";i:12;s:0:"";i:13;s:10:"PAM18_0885";i:14;s:6:"Operon";i:15;s:7:"1264459";i:16;s:123:"PAM18_0892;PAM18_0891;PAM18_0890(pgpA);PAM18_0889(thiL);PAM18_0888(nusB);PAM18_0887(ribH);PAM18_0886(ribB);PAM18_0885(ribC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1874801-1874857";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1874461-1874776";i:10;s:1:"-";i:11;s:10:"PAM18_1704";i:12;s:0:"";i:13;s:10:"PAM18_1704";i:14;s:11:"Single gene";i:15;s:7:"3682861";i:16;s:10:"PAM18_1704";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2212173-2212323";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2211888-2212071";i:10;s:1:"-";i:11;s:4:"cbtB";i:12;s:0:"";i:13;s:10:"PAM18_2016";i:14;s:6:"Operon";i:15;s:7:"1264682";i:16;s:27:"PAM18_2016(cbtB);PAM18_2015";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2212382-2212573";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2212693-2213746";i:10;s:1:"+";i:11;s:10:"PAM18_2017";i:12;s:0:"";i:13;s:10:"PAM18_2017";i:14;s:6:"Operon";i:15;s:7:"1264683";i:16;s:27:"PAM18_2018(cobN);PAM18_2017";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2252360-2252565";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2250104-2252261";i:10;s:1:"-";i:11;s:10:"PAM18_2051";i:12;s:0:"";i:13;s:10:"PAM18_2051";i:14;s:6:"Operon";i:15;s:7:"1264689";i:16;s:43:"PAM18_2051;PAM18_2050;PAM18_2049;PAM18_2048";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2252723-2252888";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2252897-2253467";i:10;s:1:"+";i:11;s:10:"PAM18_2052";i:12;s:0:"";i:13;s:10:"PAM18_2052";i:14;s:11:"Single gene";i:15;s:7:"3682986";i:16;s:10:"PAM18_2052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2256673-2256924";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2257013-2258384";i:10;s:1:"+";i:11;s:10:"PAM18_2056";i:12;s:0:"";i:13;s:10:"PAM18_2056";i:14;s:6:"Operon";i:15;s:7:"1264691";i:16;s:61:"PAM18_2059(cobJ);PAM18_2058(cobI);PAM18_2057(cobH);PAM18_2056";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3527319-3527367";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3526980-3527304";i:10;s:1:"-";i:11;s:10:"PAM18_3159";i:12;s:0:"";i:13;s:10:"PAM18_3159";i:14;s:6:"Operon";i:15;s:7:"1264906";i:16;s:21:"PAM18_3158;PAM18_3159";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4172801-4173009";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4170866-4172705";i:10;s:1:"-";i:11;s:10:"PAM18_3758";i:12;s:0:"";i:13;s:10:"PAM18_3758";i:14;s:6:"Operon";i:15;s:7:"1265030";i:16;s:168:"PAM18_3748(cobS);PAM18_3749;PAM18_3750(cobT);PAM18_3751(cobU);PAM18_3752(cobQ);PAM18_3753(cobC);PAM18_3754(cobD);PAM18_3755;PAM18_3756(cobB);PAM18_3757(cobO);PAM18_3758";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4954209-4954271";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4953760-4954144";i:10;s:1:"-";i:11;s:10:"PAM18_4474";i:12;s:0:"";i:13;s:10:"PAM18_4474";i:14;s:11:"Single gene";i:15;s:7:"3683951";i:16;s:10:"PAM18_4474";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5236906-5237029";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5237119-5237698";i:10;s:1:"+";i:11;s:10:"PAM18_4724";i:12;s:0:"";i:13;s:10:"PAM18_4724";i:14;s:11:"Single gene";i:15;s:7:"3684039";i:16;s:10:"PAM18_4724";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017548.1";i:2;s:27:"Pseudomonas aeruginosa M18 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5634850-5634986";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5632876-5634760";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:10:"PAM18_5084";i:14;s:11:"Single gene";i:15;s:7:"3684166";i:16;s:16:"PAM18_5084(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}}