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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
137068-137170
(+)
SAM
137257-138832 (+)
LMKG_02190
LMKG_02190
Single gene
DOOR ID:
3680187
LMKG_02190
View Structure
2
309203-309322
(-)
SAM
308270-309092 (-)
LMKG_01636
LMKG_01636
Operon
DOOR ID:
1367478
LMKG_01636,
LMKG_01637,
LMKG_01638,
LMKG_01639
View Structure
3
340022-340127
(+)
TPP
340213-340888 (+)
LMKG_01602
LMKG_01602
Operon
DOOR ID:
1367485
LMKG_01599,
LMKG_01600,
LMKG_01601,
LMKG_01602
View Structure
4
609695-609796
(-)
purine
608305-609601 (-)
LMKG_01321
LMKG_01321
Single gene
DOOR ID:
3680382
LMKG_01321
View Structure
5
636509-636609
(-)
SAM
635122-636400 (-)
LMKG_01297
LMKG_01297
Operon
DOOR ID:
1367531
LMKG_01297,
LMKG_01298
View Structure
6
755140-755334
(+)
glmS
755419-757225 (+)
LMKG_03160
LMKG_03160
Single gene
DOOR ID:
3680440
LMKG_03160
View Structure
7
825168-825365
(-)
lysine
823617-825078 (-)
LMKG_03162
LMKG_03162
Single gene
DOOR ID:
3680473
LMKG_03162
View Structure
8
881469-881566
(+)
SAM
881660-882764 (+)
LMKG_02453
LMKG_02453
Single gene
DOOR ID:
3680501
LMKG_02453
View Structure
9
906633-906680
(+)
PreQ1
906685-907174 (+)
LMKG_02427
LMKG_02427
Single gene
DOOR ID:
3680510
LMKG_02427
View Structure
10
1020176-1020279
(+)
yybP-ykoY
1020377-1021145 (+)
LMKG_01933
LMKG_01933
Single gene
DOOR ID:
3680542
LMKG_01933
View Structure
11
1157222-1157412
(+)
cobalamin
1157564-1158449 (-)
LMKG_01784
LMKG_01784
Single gene
DOOR ID:
3680587
LMKG_01784
View Structure
12
1175489-1175632
(+)
cobalamin
1176049-1177189 (+)
LMKG_01761
LMKG_01761
Single gene
DOOR ID:
3680588
LMKG_01761
View Structure
13
1193894-1194071
(+)
cobalamin
1194232-1195591 (+)
LMKG_01737
LMKG_01737
Operon
DOOR ID:
1367650
LMKG_01719,
LMKG_01720,
LMKG_01721,
LMKG_01722,
LMKG_01723,
LMKG_01724,
LMKG_01725,
LMKG_01726,
LMKG_01727,
LMKG_01728,
LMKG_01729,
LMKG_01730,
LMKG_01731,
LMKG_01732,
LMKG_01733,
LMKG_01734,
LMKG_01735,
LMKG_01736,
LMKG_01737
View Structure
14
1393226-1393317
(+)
glycine
1393400-1394489 (+)
LMKG_00870
LMKG_00870
Operon
DOOR ID:
1367695
LMKG_00868,
LMKG_00869,
LMKG_00870
View Structure
15
1481545-1481655
(-)
TPP
1480915-1481476 (-)
LMKG_00786
LMKG_00786
Single gene
DOOR ID:
3680668
LMKG_00786
View Structure
16
1736920-1737028
(-)
SAM
1735612-1736812 (-)
LMKG_02973
LMKG_02973
Single gene
DOOR ID:
3680739
LMKG_02973
View Structure
17
1759868-1759974
(-)
SAM
1757463-1759761 (-)
LMKG_02956
LMKG_02956
Operon
DOOR ID:
1367777
LMKG_02959,
LMKG_02958,
LMKG_02957,
LMKG_02956
View Structure
18
1979129-1979229
(-)
purine
1978468-1979047 (-)
LMKG_00451
LMKG_00451
Operon
DOOR ID:
1367819
LMKG_00452,
LMKG_00451
View Structure
19
2040787-2040909
(-)
FMN
2039985-2040597 (-)
LMKG_00387
LMKG_00387
Single gene
DOOR ID:
3680820
LMKG_00387
View Structure
20
2509520-2509638
(-)
SAM
2508407-2509430 (-)
LMKG_02723
LMKG_02723
Operon
DOOR ID:
1367932
LMKG_02725,
LMKG_02724,
LMKG_02723
View Structure
21
2795148-2795314
(-)
ykoK
2792291-2794862 (-)
LMKG_02153
LMKG_02153
Operon
DOOR ID:
1367994
LMKG_02155,
LMKG_02154,
LMKG_02153
View Structure
Genome:
Listeria monocytogenes FSL R2-561
(
NC_017546.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1157222-1157412";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1157564-1158449";i:10;s:1:"-";i:11;s:10:"LMKG_01784";i:12;s:0:"";i:13;s:10:"LMKG_01784";i:14;s:11:"Single gene";i:15;s:7:"3680587";i:16;s:10:"LMKG_01784";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1175489-1175632";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1176049-1177189";i:10;s:1:"+";i:11;s:10:"LMKG_01761";i:12;s:0:"";i:13;s:10:"LMKG_01761";i:14;s:11:"Single gene";i:15;s:7:"3680588";i:16;s:10:"LMKG_01761";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1193894-1194071";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1194232-1195591";i:10;s:1:"+";i:11;s:10:"LMKG_01737";i:12;s:0:"";i:13;s:10:"LMKG_01737";i:14;s:6:"Operon";i:15;s:7:"1367650";i:16;s:208:"LMKG_01719;LMKG_01720;LMKG_01721;LMKG_01722;LMKG_01723;LMKG_01724;LMKG_01725;LMKG_01726;LMKG_01727;LMKG_01728;LMKG_01729;LMKG_01730;LMKG_01731;LMKG_01732;LMKG_01733;LMKG_01734;LMKG_01735;LMKG_01736;LMKG_01737";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1393226-1393317";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1393400-1394489";i:10;s:1:"+";i:11;s:10:"LMKG_00870";i:12;s:0:"";i:13;s:10:"LMKG_00870";i:14;s:6:"Operon";i:15;s:7:"1367695";i:16;s:32:"LMKG_00868;LMKG_00869;LMKG_00870";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1481545-1481655";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1480915-1481476";i:10;s:1:"-";i:11;s:10:"LMKG_00786";i:12;s:0:"";i:13;s:10:"LMKG_00786";i:14;s:11:"Single gene";i:15;s:7:"3680668";i:16;s:10:"LMKG_00786";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1736920-1737028";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1735612-1736812";i:10;s:1:"-";i:11;s:10:"LMKG_02973";i:12;s:0:"";i:13;s:10:"LMKG_02973";i:14;s:11:"Single gene";i:15;s:7:"3680739";i:16;s:10:"LMKG_02973";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1759868-1759974";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1757463-1759761";i:10;s:1:"-";i:11;s:10:"LMKG_02956";i:12;s:0:"";i:13;s:10:"LMKG_02956";i:14;s:6:"Operon";i:15;s:7:"1367777";i:16;s:43:"LMKG_02959;LMKG_02958;LMKG_02957;LMKG_02956";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1979129-1979229";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1978468-1979047";i:10;s:1:"-";i:11;s:10:"LMKG_00451";i:12;s:0:"";i:13;s:10:"LMKG_00451";i:14;s:6:"Operon";i:15;s:7:"1367819";i:16;s:21:"LMKG_00452;LMKG_00451";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2040787-2040909";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2039985-2040597";i:10;s:1:"-";i:11;s:10:"LMKG_00387";i:12;s:0:"";i:13;s:10:"LMKG_00387";i:14;s:11:"Single gene";i:15;s:7:"3680820";i:16;s:10:"LMKG_00387";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2509520-2509638";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2508407-2509430";i:10;s:1:"-";i:11;s:10:"LMKG_02723";i:12;s:0:"";i:13;s:10:"LMKG_02723";i:14;s:6:"Operon";i:15;s:7:"1367932";i:16;s:32:"LMKG_02725;LMKG_02724;LMKG_02723";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_017546.1";i:2;s:34:"Listeria monocytogenes FSL R2-561 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2795148-2795314";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2792291-2794862";i:10;s:1:"-";i:11;s:10:"LMKG_02153";i:12;s:0:"";i:13;s:10:"LMKG_02153";i:14;s:6:"Operon";i:15;s:7:"1367994";i:16;s:32:"LMKG_02155;LMKG_02154;LMKG_02153";i:17;s:0:"";i:18;s:15:"View Structure ";}}