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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
142752-142854
(+)
SAM
142940-144515 (+)
LMOG_01477
LMOG_01477
Operon
DOOR ID:
1059522
LMOG_01477,
LMOG_01476,
LMOG_01475
View Structure
2
316345-316464
(-)
SAM
315412-316234 (-)
LMOG_02541
LMOG_02541
Operon
DOOR ID:
1059549
LMOG_02545,
LMOG_02544,
LMOG_02543,
LMOG_02542,
LMOG_02541
View Structure
3
339473-339578
(+)
TPP
339664-340339 (+)
LMOG_02516
LMOG_02516
Operon
DOOR ID:
1059554
LMOG_02516,
LMOG_02515,
LMOG_02514,
LMOG_02513
View Structure
4
629425-629526
(-)
purine
628035-629331 (-)
LMOG_02180
LMOG_02180
Single gene
DOOR ID:
3679788
LMOG_02180
View Structure
5
656222-656322
(-)
SAM
654835-656113 (-)
LMOG_02157
LMOG_02157
Operon
DOOR ID:
1059612
LMOG_02158,
LMOG_02157
View Structure
6
775532-775726
(+)
glmS
775811-777617 (+)
LMOG_02010
LMOG_02010
Operon
DOOR ID:
1059641
LMOG_02010,
LMOG_02009,
LMOG_02008,
LMOG_02007,
LMOG_02006
View Structure
7
847797-847994
(-)
lysine
846246-847707 (-)
LMOG_01935
LMOG_01935
Single gene
DOOR ID:
3679822
LMOG_01935
View Structure
8
904847-904944
(+)
SAM
905038-906142 (+)
LMOG_00888
LMOG_00888
Operon
DOOR ID:
1059662
LMOG_00888,
LMOG_00887,
LMOG_00886,
LMOG_00885
View Structure
9
929942-929989
(+)
PreQ1
929994-930483 (+)
LMOG_00863
LMOG_00863
Single gene
DOOR ID:
3679840
LMOG_00863
View Structure
10
1042481-1042584
(+)
yybP-ykoY
1042682-1043450 (+)
LMOG_00734
LMOG_00734
Operon
DOOR ID:
1059692
LMOG_00734,
LMOG_00733,
LMOG_00732
View Structure
11
1180178-1180368
(+)
cobalamin
1180520-1181405 (-)
LMOG_00579
LMOG_00579
Single gene
DOOR ID:
3679872
LMOG_00579
View Structure
12
1198446-1198589
(+)
cobalamin
1198749-1199001 (+)
LMOG_00557
LMOG_00557
Operon
DOOR ID:
1059720
LMOG_00557,
LMOG_00556
View Structure
13
1216850-1217027
(+)
cobalamin
1217188-1218547 (+)
LMOG_00534
LMOG_00534
Operon
DOOR ID:
1059722
LMOG_00534,
LMOG_00533,
LMOG_00532,
LMOG_00531,
LMOG_00530,
LMOG_00529,
LMOG_00528,
LMOG_00527,
LMOG_00526,
LMOG_00525,
LMOG_00524,
LMOG_00523,
LMOG_00522,
LMOG_00521,
LMOG_00520,
LMOG_00519,
LMOG_00518,
LMOG_00517,
LMOG_00516
View Structure
14
1373230-1373321
(+)
glycine
1373404-1374493 (+)
LMOG_00360
LMOG_00360
Operon
DOOR ID:
1059753
LMOG_00360,
LMOG_00359,
LMOG_00358
View Structure
15
1461560-1461670
(-)
TPP
1460930-1461491 (-)
LMOG_00272
LMOG_00272
Single gene
DOOR ID:
3679909
LMOG_00272
View Structure
16
1715273-1715381
(-)
SAM
1713965-1715165 (-)
LMOG_00022
LMOG_00022
Operon
DOOR ID:
1059815
LMOG_00023,
LMOG_00022
View Structure
17
1738220-1738326
(-)
SAM
1735815-1738113 (-)
LMOG_00003
LMOG_00003
Operon
DOOR ID:
1059819
LMOG_00006,
LMOG_00005,
LMOG_00004,
LMOG_00003
View Structure
18
1957506-1957606
(-)
purine
1956845-1957424 (-)
LMOG_01356
LMOG_01356
Operon
DOOR ID:
1059854
LMOG_01357,
LMOG_01356
View Structure
19
2019171-2019293
(-)
FMN
2018369-2018981 (-)
LMOG_01293
LMOG_01293
Single gene
DOOR ID:
3679968
LMOG_01293
View Structure
20
2500229-2500347
(-)
SAM
2499116-2500139 (-)
LMOG_02449
LMOG_02449
Operon
DOOR ID:
1059967
LMOG_02451,
LMOG_02450,
LMOG_02449
View Structure
21
2823759-2823925
(-)
ykoK
2820902-2823473 (-)
LMOG_01815
LMOG_01815
Operon
DOOR ID:
1060024
LMOG_01818,
LMOG_01817,
LMOG_01816,
LMOG_01815
View Structure
Genome:
Listeria monocytogenes J0161
(
NC_017545.1
);
Phylum:
Firmicutes
a:22:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"142752-142854";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"142940-144515";i:10;s:1:"+";i:11;s:10:"LMOG_01477";i:12;s:0:"";i:13;s:10:"LMOG_01477";i:14;s:6:"Operon";i:15;s:7:"1059522";i:16;s:32:"LMOG_01477;LMOG_01476;LMOG_01475";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"316345-316464";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"315412-316234";i:10;s:1:"-";i:11;s:10:"LMOG_02541";i:12;s:0:"";i:13;s:10:"LMOG_02541";i:14;s:6:"Operon";i:15;s:7:"1059549";i:16;s:54:"LMOG_02545;LMOG_02544;LMOG_02543;LMOG_02542;LMOG_02541";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"339473-339578";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"339664-340339";i:10;s:1:"+";i:11;s:10:"LMOG_02516";i:12;s:0:"";i:13;s:10:"LMOG_02516";i:14;s:6:"Operon";i:15;s:7:"1059554";i:16;s:43:"LMOG_02516;LMOG_02515;LMOG_02514;LMOG_02513";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"629425-629526";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"628035-629331";i:10;s:1:"-";i:11;s:10:"LMOG_02180";i:12;s:0:"";i:13;s:10:"LMOG_02180";i:14;s:11:"Single gene";i:15;s:7:"3679788";i:16;s:10:"LMOG_02180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"656222-656322";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"654835-656113";i:10;s:1:"-";i:11;s:10:"LMOG_02157";i:12;s:0:"";i:13;s:10:"LMOG_02157";i:14;s:6:"Operon";i:15;s:7:"1059612";i:16;s:21:"LMOG_02158;LMOG_02157";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"775532-775726";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"775811-777617";i:10;s:1:"+";i:11;s:10:"LMOG_02010";i:12;s:0:"";i:13;s:10:"LMOG_02010";i:14;s:6:"Operon";i:15;s:7:"1059641";i:16;s:54:"LMOG_02010;LMOG_02009;LMOG_02008;LMOG_02007;LMOG_02006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"847797-847994";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"846246-847707";i:10;s:1:"-";i:11;s:10:"LMOG_01935";i:12;s:0:"";i:13;s:10:"LMOG_01935";i:14;s:11:"Single gene";i:15;s:7:"3679822";i:16;s:10:"LMOG_01935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"904847-904944";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"905038-906142";i:10;s:1:"+";i:11;s:10:"LMOG_00888";i:12;s:0:"";i:13;s:10:"LMOG_00888";i:14;s:6:"Operon";i:15;s:7:"1059662";i:16;s:43:"LMOG_00888;LMOG_00887;LMOG_00886;LMOG_00885";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"929942-929989";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"929994-930483";i:10;s:1:"+";i:11;s:10:"LMOG_00863";i:12;s:0:"";i:13;s:10:"LMOG_00863";i:14;s:11:"Single gene";i:15;s:7:"3679840";i:16;s:10:"LMOG_00863";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1042481-1042584";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1042682-1043450";i:10;s:1:"+";i:11;s:10:"LMOG_00734";i:12;s:0:"";i:13;s:10:"LMOG_00734";i:14;s:6:"Operon";i:15;s:7:"1059692";i:16;s:32:"LMOG_00734;LMOG_00733;LMOG_00732";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1180178-1180368";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1180520-1181405";i:10;s:1:"-";i:11;s:10:"LMOG_00579";i:12;s:0:"";i:13;s:10:"LMOG_00579";i:14;s:11:"Single gene";i:15;s:7:"3679872";i:16;s:10:"LMOG_00579";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1198446-1198589";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1198749-1199001";i:10;s:1:"+";i:11;s:10:"LMOG_00557";i:12;s:0:"";i:13;s:10:"LMOG_00557";i:14;s:6:"Operon";i:15;s:7:"1059720";i:16;s:21:"LMOG_00557;LMOG_00556";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1216850-1217027";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1217188-1218547";i:10;s:1:"+";i:11;s:10:"LMOG_00534";i:12;s:0:"";i:13;s:10:"LMOG_00534";i:14;s:6:"Operon";i:15;s:7:"1059722";i:16;s:208:"LMOG_00534;LMOG_00533;LMOG_00532;LMOG_00531;LMOG_00530;LMOG_00529;LMOG_00528;LMOG_00527;LMOG_00526;LMOG_00525;LMOG_00524;LMOG_00523;LMOG_00522;LMOG_00521;LMOG_00520;LMOG_00519;LMOG_00518;LMOG_00517;LMOG_00516";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1373230-1373321";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1373404-1374493";i:10;s:1:"+";i:11;s:10:"LMOG_00360";i:12;s:0:"";i:13;s:10:"LMOG_00360";i:14;s:6:"Operon";i:15;s:7:"1059753";i:16;s:32:"LMOG_00360;LMOG_00359;LMOG_00358";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1461560-1461670";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1460930-1461491";i:10;s:1:"-";i:11;s:10:"LMOG_00272";i:12;s:0:"";i:13;s:10:"LMOG_00272";i:14;s:11:"Single gene";i:15;s:7:"3679909";i:16;s:10:"LMOG_00272";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1715273-1715381";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1713965-1715165";i:10;s:1:"-";i:11;s:10:"LMOG_00022";i:12;s:0:"";i:13;s:10:"LMOG_00022";i:14;s:6:"Operon";i:15;s:7:"1059815";i:16;s:21:"LMOG_00023;LMOG_00022";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1738220-1738326";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1735815-1738113";i:10;s:1:"-";i:11;s:10:"LMOG_00003";i:12;s:0:"";i:13;s:10:"LMOG_00003";i:14;s:6:"Operon";i:15;s:7:"1059819";i:16;s:43:"LMOG_00006;LMOG_00005;LMOG_00004;LMOG_00003";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1957506-1957606";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1956845-1957424";i:10;s:1:"-";i:11;s:10:"LMOG_01356";i:12;s:0:"";i:13;s:10:"LMOG_01356";i:14;s:6:"Operon";i:15;s:7:"1059854";i:16;s:21:"LMOG_01357;LMOG_01356";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2019171-2019293";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2018369-2018981";i:10;s:1:"-";i:11;s:10:"LMOG_01293";i:12;s:0:"";i:13;s:10:"LMOG_01293";i:14;s:11:"Single gene";i:15;s:7:"3679968";i:16;s:10:"LMOG_01293";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2500229-2500347";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2499116-2500139";i:10;s:1:"-";i:11;s:10:"LMOG_02449";i:12;s:0:"";i:13;s:10:"LMOG_02449";i:14;s:6:"Operon";i:15;s:7:"1059967";i:16;s:32:"LMOG_02451;LMOG_02450;LMOG_02449";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_017545.1";i:2;s:29:"Listeria monocytogenes J0161 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2823759-2823925";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2820902-2823473";i:10;s:1:"-";i:11;s:10:"LMOG_01815";i:12;s:0:"";i:13;s:10:"LMOG_01815";i:14;s:6:"Operon";i:15;s:7:"1060024";i:16;s:43:"LMOG_01818;LMOG_01817;LMOG_01816;LMOG_01815";i:17;s:0:"";i:18;s:15:"View Structure ";}}