Genome: Paenibacillus polymyxa M1 main (NC_017542.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 29934-30213 (+)ydaO-yuaA30373-31633 (+)yabE

PPM_0024Operon

DOOR ID: 1058684		PPM_0024 (yabE),
PPM_0025 (rnmV),
PPM_0026 (ksgA),
PPM_0027 (yabG)		 View Structure
2 135451-135588 (-)ydaO-yuaA134944-135445 (-)spr1

PPM_0099Operon

DOOR ID: 1058704		PPM_0097 (natSF),
PPM_0098 (M1-253),
PPM_0099 (spr1)		 View Structure
3 486822-486936 (-)glycine485920-486610 (-)sdhB1

PPM_0388Operon

DOOR ID: 1058772		PPM_0387 (sdhA1),
PPM_0388 (sdhB1)		 View Structure
4 506019-506100 (-)c-di-GMP-I501225-504837 (-)M1-568

PPM_0403operon

DOOR ID: 1058775		PPM_0401 (M1-566),
PPM_0402 (srtA),
PPM_0403 (M1-568)		 View Structure
5 506141-506219 (-)c-di-GMP-I501225-504837 (-)M1-568

PPM_0403operon

DOOR ID: 1058775		PPM_0401 (M1-566),
PPM_0402 (srtA),
PPM_0403 (M1-568)		 View Structure
6 534249-534358 (-)TPP533008-534052 (-)M1-596

PPM_0427Single gene

DOOR ID: 3677694		PPM_0427 (M1-596) View Structure
7 890397-890508 (+)TPP890691-892506 (+)thiC

PPM_0741Single gene

DOOR ID: 3677788		PPM_0741 (thiC) View Structure
8 945688-945789 (+)purine945937-946423 (+)purE

PPM_0785Operon

DOOR ID: 1058862		PPM_0785 (purE),
PPM_0786 (purK),
PPM_0787 (purB)		 View Structure
9 1025788-1025872 (-)ZMP-ZTP1024807-1025674 (-)folD1

PPM_0860Operon

DOOR ID: 1058882		PPM_0859 (ftcd),
PPM_0860 (folD1)		 View Structure
10 1057811-1057920 (+)TPP1058224-1058821 (+)ykoE3

PPM_0888Operon

DOOR ID: 1058890		PPM_0888 (ykoE3),
PPM_0889 (M1-1085),
PPM_0890 (ykoC),
PPM_0891 (metN1),
PPM_0892 (metI1)		 View Structure
11 1290965-1291008 (-)PreQ11290145-1290829 (-)thiI1

PPM_1046Operon

DOOR ID: 1058925		PPM_1044 (queE3),
PPM_1045 (ygcM),
PPM_1046 (thiI1)		 View Structure
12 1357088-1357169 (+)c-di-GMP-I1357182-1358784 (+)manA5

PPM_1107operon

DOOR ID: 1058937		PPM_1107 (manA5),
PPM_1108 (M1_1327)		 View Structure
13 1442213-1442357 (-)FMN1441094-1442042 (-)yoaV3

PPM_1183Single gene

DOOR ID: 3677894		PPM_1183 (yoaV3) View Structure
14 1468686-1468859 (+)ydaO-yuaA1468972-1469368 (+)M1_1434

PPM_1209Single gene

DOOR ID: 3677904		PPM_1209 (M1_1434) View Structure
15 1519117-1519328 (+)cobalamin1519535-1520543 (+)yvrC

PPM_1256Operon

DOOR ID: 1058971		PPM_1256 (yvrC),
PPM_1257 (fecD1),
PPM_1258 (fepC),
PPM_1259 (cobT),
PPM_1260 (cobU),
PPM_1261 (cobS),
PPM_1262 (cbiP)		 View Structure
16 1535106-1535151 (+)PreQ11535154-1535853 (+)ypdP

PPM_1268Single gene

DOOR ID: 3677918		PPM_1268 (ypdP) View Structure
17 1645647-1645773 (+)SAM1645890-1646808 (+)metA

PPM_1375Operon

DOOR ID: 1058999		PPM_1375 (metA),
PPM_1376 (metC1),
PPM_1377 (metC3)		 View Structure
18 2700705-2700803 (+)ykkC-yxkD2700813-2700987 (+)M1_2639

PPM_2339Operon

DOOR ID: 1059207		PPM_2337 (yybA),
PPM_2338 (paiA),
PPM_2339 (M1_2639)		 View Structure
19 3045391-3045558 (-)ydaO-yuaA3044715-3045384 (-)yocH

PPM_2576Single gene

DOOR ID: 3678293		PPM_2576 (yocH) View Structure
20 3082737-3082845 (-)TPP3081812-3082406 (-)tenI

PPM_2608Operon

DOOR ID: 1059260		PPM_2603 (ykoG5),
PPM_2604 (moeB1),
PPM_2605 (thiG1),
PPM_2606 (thiG3),
PPM_2607 (goxB),
PPM_2608 (tenI)		 View Structure
21 3172195-3172295 (+)ykkC-yxkD3172302-3172719 (+)ykkC1

PPM_2701Operon

DOOR ID: 1059276		PPM_2701 (ykkC1),
PPM_2702 (ykkD1)		 View Structure
22 3454575-3454747 (-)FMN3453579-3454245 (-)ribB

PPM_2983Operon

DOOR ID: 1059326		PPM_2977 (ytfJ),
PPM_2978 (ytfI),
PPM_2979 (scpB),
PPM_2980 (scpA),
PPM_2981 (ribH),
PPM_2982 (ribA1),
PPM_2983 (ribB)		 View Structure
23 3551891-3551992 (-)yybP-ykoY3551050-3551740 (-)terC1

PPM_3078Operon

DOOR ID: 1059343		PPM_3075 (M1_3428),
PPM_3076 (yxiS),
PPM_3077 (mviM3),
PPM_3078 (terC1)		 View Structure