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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
24378-24613
(-)
lysine
22848-24198 (-)
KPN2242_00100
KPN2242_00100
Single gene
DOOR ID:
3675451
KPN2242_00100
View Structure
2
170048-170092
(+)
mini-ykkC
170105-170423 (+)
KPN2242_00810
KPN2242_00810
Single gene
DOOR ID:
3675526
KPN2242_00810
View Structure
3
277206-277322
(+)
Mg sensor
277420-280129 (+)
KPN2242_01330
KPN2242_01330
Single gene
DOOR ID:
3675572
KPN2242_01330
View Structure
4
594770-594899
(-)
TPP
593752-594733 (-)
tbpA
KPN2242_02770
Operon
DOOR ID:
1263422
KPN2242_02760
(thiQ)
,
KPN2242_02765
(thiP)
,
KPN2242_02770
(tbpA)
View Structure
5
1453998-1454136
(+)
MOCO
1455136-1455649 (+)
KPN2242_06865
KPN2242_06865
Operon
DOOR ID:
1263595
KPN2242_06860
(moaA)
,
KPN2242_06865,
KPN2242_06870,
KPN2242_06875,
KPN2242_06880
(moaE)
,
KPN2242_06885
View Structure
6
1659856-1659910
(-)
fluoride
1654862-1659311 (+)
mukB
KPN2242_07825
Operon
DOOR ID:
1263634
KPN2242_07810,
KPN2242_07815,
KPN2242_07820,
KPN2242_07825
(mukB)
View Structure
7
2482287-2482388
(+)
TPP
2482456-2483152 (+)
KPN2242_11885
KPN2242_11885
Operon
DOOR ID:
1263767
KPN2242_11885,
KPN2242_11890,
KPN2242_11895,
KPN2242_11900
View Structure
8
2507209-2507288
(-)
ZMP-ZTP
2506558-2507191 (-)
KPN2242_11995
KPN2242_11995
Single gene
DOOR ID:
3676395
KPN2242_11995
View Structure
9
3048984-3049086
(+)
yybP-ykoY
3049203-3049770 (+)
KPN2242_14655
KPN2242_14655
Single gene
DOOR ID:
3676648
KPN2242_14655
View Structure
10
3303385-3303482
(-)
TPP
3302576-3303350 (-)
KPN2242_15810
KPN2242_15810
Operon
DOOR ID:
1263899
KPN2242_15805,
KPN2242_15810
View Structure
11
3994011-3994189
(-)
cobalamin
3992541-3993918 (-)
KPN2242_18950
KPN2242_18950
Operon
DOOR ID:
1264029
KPN2242_18860
(cobT)
,
KPN2242_18865
(cobU)
,
KPN2242_18870,
KPN2242_18875
(cbiO)
,
KPN2242_18880,
KPN2242_18885,
KPN2242_18890,
KPN2242_18895,
KPN2242_18900,
KPN2242_18905,
KPN2242_18910
(cbiH)
,
KPN2242_18915,
KPN2242_18920
(cbiF)
,
KPN2242_18925,
KPN2242_18930,
KPN2242_18935
(cbiD)
,
KPN2242_18940
(cbiC)
,
KPN2242_18945
(cobD)
,
KPN2242_18950
View Structure
12
4282105-4282256
(-)
FMN
4281345-4281999 (-)
ribB
KPN2242_20350
Single gene
DOOR ID:
3677110
KPN2242_20350
(ribB)
View Structure
13
4672437-4672618
(+)
ykoK
4672675-4673689 (+)
KPN2242_22295
KPN2242_22295
Single gene
DOOR ID:
3677236
KPN2242_22295
View Structure
14
5114415-5114602
(+)
cobalamin
5114666-5116505 (+)
btuB
KPN2242_24325
Operon
DOOR ID:
1264245
KPN2242_24325
(btuB)
,
KPN2242_24330
View Structure
15
5242660-5242784
(-)
TPP
5240678-5242574 (-)
KPN2242_24830
KPN2242_24830
Operon
DOOR ID:
1264266
KPN2242_24805
(thiH)
,
KPN2242_24810
(thiG)
,
KPN2242_24815,
KPN2242_24820,
KPN2242_24825,
KPN2242_24830
View Structure
Genome:
Klebsiella pneumoniae KCTC 2242
(
NC_017540.1
);
Phylum:
Gammaproteobacteria
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";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"594770-594899";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"593752-594733";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:13:"KPN2242_02770";i:14;s:6:"Operon";i:15;s:7:"1263422";i:16;s:59:"KPN2242_02760(thiQ);KPN2242_02765(thiP);KPN2242_02770(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1453998-1454136";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1455136-1455649";i:10;s:1:"+";i:11;s:13:"KPN2242_06865";i:12;s:0:"";i:13;s:13:"KPN2242_06865";i:14;s:6:"Operon";i:15;s:7:"1263595";i:16;s:95:"KPN2242_06860(moaA);KPN2242_06865;KPN2242_06870;KPN2242_06875;KPN2242_06880(moaE);KPN2242_06885";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1659856-1659910";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1654862-1659311";i:10;s:1:"+";i:11;s:4:"mukB";i:12;s:0:"";i:13;s:13:"KPN2242_07825";i:14;s:6:"Operon";i:15;s:7:"1263634";i:16;s:61:"KPN2242_07810;KPN2242_07815;KPN2242_07820;KPN2242_07825(mukB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2482287-2482388";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2482456-2483152";i:10;s:1:"+";i:11;s:13:"KPN2242_11885";i:12;s:0:"";i:13;s:13:"KPN2242_11885";i:14;s:6:"Operon";i:15;s:7:"1263767";i:16;s:55:"KPN2242_11885;KPN2242_11890;KPN2242_11895;KPN2242_11900";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2507209-2507288";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2506558-2507191";i:10;s:1:"-";i:11;s:13:"KPN2242_11995";i:12;s:0:"";i:13;s:13:"KPN2242_11995";i:14;s:11:"Single gene";i:15;s:7:"3676395";i:16;s:13:"KPN2242_11995";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3048984-3049086";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3049203-3049770";i:10;s:1:"+";i:11;s:13:"KPN2242_14655";i:12;s:0:"";i:13;s:13:"KPN2242_14655";i:14;s:11:"Single gene";i:15;s:7:"3676648";i:16;s:13:"KPN2242_14655";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3303385-3303482";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3302576-3303350";i:10;s:1:"-";i:11;s:13:"KPN2242_15810";i:12;s:0:"";i:13;s:13:"KPN2242_15810";i:14;s:6:"Operon";i:15;s:7:"1263899";i:16;s:27:"KPN2242_15805;KPN2242_15810";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3994011-3994189";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3992541-3993918";i:10;s:1:"-";i:11;s:13:"KPN2242_18950";i:12;s:0:"";i:13;s:13:"KPN2242_18950";i:14;s:6:"Operon";i:15;s:7:"1264029";i:16;s:313:"KPN2242_18860(cobT);KPN2242_18865(cobU);KPN2242_18870;KPN2242_18875(cbiO);KPN2242_18880;KPN2242_18885;KPN2242_18890;KPN2242_18895;KPN2242_18900;KPN2242_18905;KPN2242_18910(cbiH);KPN2242_18915;KPN2242_18920(cbiF);KPN2242_18925;KPN2242_18930;KPN2242_18935(cbiD);KPN2242_18940(cbiC);KPN2242_18945(cobD);KPN2242_18950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017540.1";i:2;s:32:"Klebsiella pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4282105-4282256";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4281345-4281999";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:13:"KPN2242_20350";i:14;s:11:"Single 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pneumoniae KCTC 2242 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5242660-5242784";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5240678-5242574";i:10;s:1:"-";i:11;s:13:"KPN2242_24830";i:12;s:0:"";i:13;s:13:"KPN2242_24830";i:14;s:6:"Operon";i:15;s:7:"1264266";i:16;s:95:"KPN2242_24805(thiH);KPN2242_24810(thiG);KPN2242_24815;KPN2242_24820;KPN2242_24825;KPN2242_24830";i:17;s:0:"";i:18;s:15:"View Structure ";}}