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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1137191-1137301
(-)
TPP
1135965-1136163 (-)
thiS
OCA4_c10640
Operon
DOOR ID:
1262879
OCA4_c10640
(thiS)
,
OCA4_c10650
(thiO)
View Structure
2
1422789-1423003
(+)
cobalamin
1423113-1425477 (+)
metE
OCA4_c13230
Single gene
DOOR ID:
3674476
OCA4_c13230
(metE)
View Structure
3
2550483-2550738
(+)
cobalamin
2550910-2553160 (+)
OCA4_c23700
OCA4_c23700
Single gene
DOOR ID:
3674905
OCA4_c23700
View Structure
4
2709286-2709399
(+)
glycine
2709532-2710681 (+)
gcvT
OCA4_c25480
Operon
DOOR ID:
1263164
OCA4_c25480
(gcvT)
,
OCA4_c25490
(gcvH)
View Structure
5
2717090-2717151
(-)
fluoride
2716471-2716855 (-)
crcB1
OCA4_c25530
Single gene
DOOR ID:
3674992
OCA4_c25530
(crcB1)
View Structure
6
3307170-3307249
(-)
sam-alpha
3305892-3307101 (-)
metX
OCA4_c31250
Operon
DOOR ID:
1263264
OCA4_c31240,
OCA4_c31250
(metX)
View Structure
7
3416899-3416978
(+)
sam-alpha
3417051-3418263 (+)
metZ
OCA4_c32350
Single gene
DOOR ID:
3675304
OCA4_c32350
(metZ)
View Structure
Genome:
Oligotropha carboxidovorans OM4
(
NC_017538.1
);
Phylum:
Alphaproteobacteria
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